PDB_Amyloid: an extended live amyloid structure list from the PDB
Sign Up to like & getrecommendations! Published in 2019 at "FEBS Open Bio"
DOI: 10.1002/2211-5463.12524
Abstract: The Protein Data Bank (PDB) contains more than 135 000 entries at present. From these, relatively few amyloid structures can be identified, since amyloids are insoluble in water. Therefore, most amyloid structures deposited in the… read more here.
Keywords: amyloid; pdb amyloid; amyloid structures; pdb ... See more keywords
Allowance for radial dilution in evaluating the concentration dependence of sedimentation coefficients for globular proteins
Sign Up to like & getrecommendations! Published in 2017 at "European Biophysics Journal"
DOI: 10.1007/s00249-017-1259-x
Abstract: The accuracy with which the concentration dependence of the sedimentation coefficient, s = s0(1 − kc), can be quantified for globular proteins by commonly used procedures has been examined by subjecting simulated sedimentation velocity distributions for ovalbumin… read more here.
Keywords: concentration dependence; dependence sedimentation; globular proteins; sedimentation ... See more keywords
Unified understanding of folding and binding mechanisms of globular and intrinsically disordered proteins
Sign Up to like & getrecommendations! Published in 2017 at "Biophysical Reviews"
DOI: 10.1007/s12551-017-0346-7
Abstract: Extensive experimental and theoretical studies have advanced our understanding of the mechanisms of folding and binding of globular proteins, and coupled folding and binding of intrinsically disordered proteins (IDPs). The forces responsible for conformational changes… read more here.
Keywords: binding globular; folding binding; rate; globular proteins ... See more keywords
Effect of nanoscale surface topography on the adsorption of globular proteins
Sign Up to like & getrecommendations! Published in 2021 at "Applied Surface Science"
DOI: 10.1016/j.apsusc.2020.147671
Abstract: Abstract Protein adsorption is the initial step in the response of biological systems to artificial surfaces and thus a ubiquitous phenomenon in biomedicine and tissue engineering. Here, we investigate the adsorption of the three globular… read more here.
Keywords: topography; adsorption; surface; effect ... See more keywords
Is water a good solvent for the denatured state of globular proteins?
Sign Up to like & getrecommendations! Published in 2020 at "Chemical Physics Letters"
DOI: 10.1016/j.cplett.2020.137949
Abstract: Abstract Making extensive use of polymer chemistry concepts, it has recently been claimed that water is a good solvent for the denatured state of globular proteins [J. Mol. Biol. 432 (2020) 2882]. Here, I discuss… read more here.
Keywords: good solvent; water good; chemistry; globular proteins ... See more keywords
The spectroscopic and computational investigation on interaction of a novel 1,2,3-triazole with three globular proteins
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Luminescence"
DOI: 10.1016/j.jlumin.2018.09.065
Abstract: Abstract The structural properties including quantum chemical parameters and theoretical spectrum of a newly synthesized compound, ethyl 5-phenyl-2-(o-tolyl)-2H-1,2,3- triazole-4-carboxylate (EPTC) have been investigated using GaussView5.0 program package and the time dependent density functional theory (TD… read more here.
Keywords: investigation interaction; interaction novel; globular proteins; computational investigation ... See more keywords
Chemical modifications of globular proteins phototriggered by an endogenous photosensitizer.
Sign Up to like & getrecommendations! Published in 2019 at "Chemical research in toxicology"
DOI: 10.1021/acs.chemrestox.9b00286
Abstract: The main goal of the present work was to investigate the damages photoinduced by pterin (Ptr), an endogenous photosensitizer present in human skin under pathological conditions, on a globular protein such as ubiquitin (Ub). A… read more here.
Keywords: endogenous photosensitizer; proteins phototriggered; chemical modifications; globular proteins ... See more keywords
Dicarboxyl-terminated iron(ii) clathrochelates as ICD-reporters for globular proteins
Sign Up to like & getrecommendations! Published in 2019 at "RSC Advances"
DOI: 10.1039/c9ra04102h
Abstract: Method of asymmetric mono-ribbed functionalization of iron(ii) clathrochelates is developed, new compounds are studied as ICD reporters for globular proteins. read more here.
Keywords: dicarboxyl terminated; icd reporters; globular proteins; iron clathrochelates ... See more keywords
Rapid 3-dimensional shape determination of globular proteins by mobility capillary electrophoresis and native mass spectrometry†
Sign Up to like & getrecommendations! Published in 2020 at "Chemical Science"
DOI: 10.1039/d0sc01965h
Abstract: Established high-throughput proteomics methods provide limited information on the stereostructures of proteins. Traditional technologies for protein structure determination typically require laborious steps and cannot be performed in a high-throughput fashion. Here, we report a new… read more here.
Keywords: protein; native mass; shape; determination ... See more keywords
Dynamic frustrated charge hotspots created by charge density modulation sequester globular proteins into complex coacervates
Sign Up to like & getrecommendations! Published in 2023 at "Chemical Science"
DOI: 10.1039/d3sc00993a
Abstract: This study presents a simple strategy for the sequestration of globular proteins as clients into synthetic polypeptide-based complex coacervates as a scaffold, thereby recapitulating the scaffold-client interaction found in biological... read more here.
Keywords: dynamic frustrated; charge; charge hotspots; frustrated charge ... See more keywords
Catalytic and binding sites prediction in globular proteins through discrete Markov chains and network centrality measures
Sign Up to like & getrecommendations! Published in 2021 at "Physical Biology"
DOI: 10.1088/1478-3975/ac211b
Abstract: In this work we use a discrete Markov chain approach combined with network centrality measures to identify and predict the location of active sites in globular proteins. To accomplish this, we use a three-dimensional network… read more here.
Keywords: network; discrete markov; globular proteins; centrality ... See more keywords