Gaussian network model can be enhanced by combining solvent accessibility in proteins
Sign Up to like & getrecommendations! Published in 2017 at "Scientific Reports"
DOI: 10.1038/s41598-017-07677-9
Abstract: Gaussian network model (GNM), regarded as the simplest and most representative coarse-grained model, has been widely adopted to analyze and reveal protein dynamics and functions. Designing a variation of the classical GNM, by defining a… read more here.
Keywords: solvent accessibility; gnm; parameter free; model ... See more keywords
The EGA + GNM framework: An integrative approach to modelling behavioural syndromes
Sign Up to like & getrecommendations! Published in 2018 at "Methods in Ecology and Evolution"
DOI: 10.1111/2041-210x.13100
Abstract: Behavioural syndromes refer to correlated suites of behavioural traits exhibiting consistent among‐individual variation, i.e. personality. Factor analysis (FA) is currently the dominant method for modelling behavioural syndromes in humans and animals. Although FA is useful… read more here.
Keywords: behavioural syndromes; gnm; modelling behavioural; ega gnm ... See more keywords
PSP-GNM: Predicting Protein Stability Changes upon Point Mutations with a Gaussian Network Model
Sign Up to like & getrecommendations! Published in 2022 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms231810711
Abstract: Understanding the effects of missense mutations on protein stability is a widely acknowledged significant biological problem. Genomic missense mutations may alter one or more amino acids, leading to increased or decreased stability of the encoded… read more here.
Keywords: protein stability; gaussian network; gnm; psp gnm ... See more keywords