HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities
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DOI: 10.1371/journal.pgen.1009776
Abstract: Shotgun metagenomics is a powerful tool to identify antimicrobial resistance (AMR) genes in microbiomes but has the limitation that extrachromosomal DNA, such as plasmids, cannot be linked with the host bacterial chromosome. Here we present… read more here.
Keywords: ham art; resistance; pipeline; antimicrobial resistance ... See more keywords