HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP
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DOI: 10.1038/s41467-021-23749-x
Abstract: Recent genome-wide chromosome conformation capture assays such as Hi-C and HiChIP have vastly expanded the resolution and throughput with which we can study 3D genomic architecture and function. Here, we present HiC-DC+, a software tool… read more here.
Keywords: differential analysis; hichip; analysis; enables systematic ... See more keywords
Loop Catalog: a comprehensive HiChIP database of human and mouse samples
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DOI: 10.1186/s13059-025-03615-5
Abstract: HiChIP enables cost-effective and high-resolution profiling of chromatin loops. To leverage the increasing number of HiChIP datasets, we develop Loop Catalog (https://loopcatalog.lji.org), a web-based database featuring loop calls from over 1000 distinct human and mouse… read more here.
Keywords: database; hichip; loop catalog; catalog ... See more keywords