Data model harmonization for the All Of Us Research Program: Transforming i2b2 data into the OMOP common data model
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DOI: 10.1371/journal.pone.0212463
Abstract: Background The All Of Us Research Program (AOU) is building a nationwide cohort of one million patients’ EHR and genomic data. Data interoperability is paramount to the program’s success. AOU is standardizing its EHR data… read more here.
Keywords: research; ontology; i2b2; program ... See more keywords
Standards-Based Procedural Phenotyping: The Arden Syntax on i2b2
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DOI: 10.3233/978-1-61499-808-2-37
Abstract: Phenotyping, or the identification of patient cohorts, is a recurring challenge in medical informatics. While there are open source tools such as i2b2 that address this problem by providing user-friendly querying interfaces, these platforms lack… read more here.
Keywords: i2b2; standards based; based procedural; arden syntax ... See more keywords
An Ontology and Data Converter from RDF to the i2b2 Data Model
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DOI: 10.3233/shti220477
Abstract: In a national effort aiming at cross-hospitals data interoperability, the Swiss Personalized Health Network elected RDF as preferred data and meta-data representation format. Yet, most clinical research software solutions are not designed to interact with… read more here.
Keywords: ontology data; ontology; data converter; i2b2 ... See more keywords