Phasing and imputation of single nucleotide polymorphism data of missing parents of biparental plant populations
Sign Up to like & getrecommendations! Published in 2021 at "Crop Science"
DOI: 10.1002/csc2.20409
Abstract: Abstract This paper presents an extension to a heuristic method for phasing and imputation of genotypes of descendants in biparental populations so that it can phase and impute genotypes of parents that are ungenotyped or… read more here.
Keywords: imputation; imputed genotypes; imputation accuracy; parent ... See more keywords
Why are rare variants hard to impute? Coalescent models reveal theoretical limits in existing algorithms.
Sign Up to like & getrecommendations! Published in 2021 at "Genetics"
DOI: 10.1093/genetics/iyab011
Abstract: Genotype imputation is an indispensable step in human genetic studies. Large reference panels with deeply sequenced genomes now allow interrogating variants with minor allele frequency < 1% without sequencing. Although it is critical to consider… read more here.
Keywords: imputation; imputation accuracy; genealogy; reference ... See more keywords
36 A large multi-breed reference panel and maximizes genotype imputation accuracy in cattle
Sign Up to like & getrecommendations! Published in 2019 at "Journal of Animal Science"
DOI: 10.1093/jas/skz122.033
Abstract: The use of array-based SNP genotyping in the beef and dairy industries has produced an astounding amount of medium-to-low density genomic data in the last decade. While low-density assays work exceptionally well in the context… read more here.
Keywords: reference panel; imputation accuracy; imputation;
A Novel Deep-Learning-Based Robust Data Transmission Period Control Framework in IoT Edge Computing System
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DOI: 10.1109/jiot.2022.3203156
Abstract: This article proposes a novel deep learning-based robust Internet of Things (IoT) sensor data transmission period control (DL-RDTPC) framework in an IoT edge computing system. In general, as the data transmission period of IoT sensors… read more here.
Keywords: imputation accuracy; period; data transmission; transmission period ... See more keywords
Novel methods for genotype imputation to whole-genome sequence and a simple linear model to predict imputation accuracy
Sign Up to like & getrecommendations! Published in 2017 at "BMC Genetics"
DOI: 10.1186/s12863-017-0588-1
Abstract: BackgroundAccurate imputation plays a major role in genomic studies of livestock industries, where the number of genotyped or sequenced animals is limited by costs. This study explored methods to create an ideal reference population for… read more here.
Keywords: genotype imputation; imputation; imputation accuracy; accuracy ... See more keywords