Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14
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DOI: 10.1038/s41598-021-90303-6
Abstract: The inter-residue contact prediction and deep learning showed the promise to improve the estimation of protein model accuracy (EMA) in the 13th Critical Assessment of Protein Structure Prediction (CASP13). To further leverage the improved inter-residue… read more here.
Keywords: inter residue; model; residue distance; deep learning ... See more keywords
Inter-residue interactions in alpha-helical transmembrane proteins
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DOI: 10.1093/bioinformatics/bty978
Abstract: Motivation The number of available membrane protein structures has markedly increased in the last years and, in parallel, the reliability of the methods to detect transmembrane (TM) segments. In the present report, we characterized inter-residue… read more here.
Keywords: transmembrane; membrane proteins; residue interactions; inter residue ... See more keywords
Protein Inter-Residue Contacts Prediction: Methods, Performances and Applications
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DOI: 10.2174/1574893613666181109130430
Abstract: Protein inter-residue contacts prediction play an important role in the field of protein structure and function research. As a low-dimensional representation of protein tertiary structure, protein inter-residue contacts could greatly help de novo protein structure… read more here.
Keywords: inter residue; residue contacts; protein inter; contacts prediction ... See more keywords
Refined Contact Map Prediction of Peptides Based on GCN and ResNet
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DOI: 10.3389/fgene.2022.859626
Abstract: Predicting peptide inter-residue contact maps plays an important role in computational biology, which determines the topology of the peptide structure. However, due to the limited number of known homologous structures, there is still much room… read more here.
Keywords: contact; inter residue; map prediction; contact map ... See more keywords
Inter-Residue Distance Prediction From Duet Deep Learning Models
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2022.887491
Abstract: Residue distance prediction from the sequence is critical for many biological applications such as protein structure reconstruction, protein–protein interaction prediction, and protein design. However, prediction of fine-grained distances between residues with long sequence separations still… read more here.
Keywords: inter residue; distance prediction; prediction; residue distance ... See more keywords