Deriving spatially explicit direct and indirect interaction networks from animal movement data
Sign Up to like & getrecommendations! Published in 2023 at "Ecology and Evolution"
DOI: 10.1002/ece3.9774
Abstract: Abstract Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems [“GPS”]) can circumvent longstanding challenges in the… read more here.
Keywords: interaction; ecology; movement; movement data ... See more keywords
Protein‐protein interaction networks as miners of biological discovery
Sign Up to like & getrecommendations! Published in 2022 at "PROTEOMICS"
DOI: 10.1002/pmic.202100190
Abstract: Protein‐protein interactions (PPIs) form the basis of a myriad of biological pathways and mechanism, such as the formation of protein complexes or the components of signaling cascades. Here, we reviewed experimental methods for identifying PPI… read more here.
Keywords: protein protein; protein interaction; biological discovery; interaction networks ... See more keywords
LUMIER: A Discovery Tool for Mammalian Protein Interaction Networks.
Sign Up to like & getrecommendations! Published in 2017 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-6747-6_11
Abstract: Protein-protein interactions (PPIs) play an essential role in all biological processes. In vivo, PPIs occur dynamically and depend on extracellular cues. To discover novel protein-protein interactions in mammalian cells, we developed a high-throughput automated technology… read more here.
Keywords: protein; protein interaction; interaction networks; lumier discovery ... See more keywords
Reconstruction of Protein-Protein Interaction Networks Using Homology-Based Search: Application to the Autophagy Pathway of Aging in Podospora anserina
Sign Up to like & getrecommendations! Published in 2020 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-9873-9_4
Abstract: The integration of the available experimental data represents a main problem in systems biology. In particular, in medical sciences, many new data became available, but often data are incomplete and of different quality and quantity.… read more here.
Keywords: protein interaction; interaction networks; protein protein; biology ... See more keywords
Drivers of the structure of plant–hummingbird interaction networks at multiple temporal scales
Sign Up to like & getrecommendations! Published in 2020 at "Oecologia"
DOI: 10.1007/s00442-020-04727-4
Abstract: In semi-arid environments, the marked contrast in temperature and precipitation over the year strongly shapes ecological communities. The composition of species and their ecological interactions within a community may vary greatly over time. Although intra-annual… read more here.
Keywords: interaction networks; plant; among years; interaction ... See more keywords
Synaptic protein interaction networks encode experience by assuming stimulus-specific and brain-region-specific states
Sign Up to like & getrecommendations! Published in 2021 at "Cell reports"
DOI: 10.1016/j.celrep.2021.110076
Abstract: SUMMARY A core network of widely expressed proteins within the glutamatergic post-synapse mediates activity-dependent synaptic plasticity throughout the brain, but the specific proteomic composition of synapses differs between brain regions. Here, we address the question,… read more here.
Keywords: brain region; stimulus specific; interaction networks; protein interaction ... See more keywords
The Human Gut Microbiome is Structured to Optimize Molecular Interaction Networks
Sign Up to like & getrecommendations! Published in 2019 at "Computational and Structural Biotechnology Journal"
DOI: 10.1016/j.csbj.2019.07.011
Abstract: Microbiome studies estimate the functions of bacterial flora in situ on the basis of species composition and gene function; however, estimation of interspecies interaction networks is challenging. This study aimed to develop a method to… read more here.
Keywords: interaction networks; metagenome data; molecular interaction; human gut ... See more keywords
SINAPs: A Software Tool for Analysis and Visualization of Interaction Networks of Molecular Dynamics Simulations
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Chemical Information and Modeling"
DOI: 10.1021/acs.jcim.1c00854
Abstract: As long as the structural study of molecular mechanisms requires multiple molecular dynamics reflecting contrasted bioactive states, the subsequent analysis of molecular interaction networks remains a bottleneck to be fairly treated and requires a user-friendly… read more here.
Keywords: tool; key interactions; molecular dynamics; analysis ... See more keywords
Probing protein interaction networks by combining MS-based proteomics and structural data integration.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.0c00066
Abstract: Protein-protein interactions play a major role in the molecular machinery of life and various techniques such as AP-MS are dedicated to their identification. However, those techniques return lists of proteins devoid of organizational structure, not… read more here.
Keywords: protein interaction; interaction networks; probing protein; combining based ... See more keywords
Identification of potential key protein interaction networks of BK virus nephropathy in patients receiving kidney transplantation
Sign Up to like & getrecommendations! Published in 2018 at "Scientific Reports"
DOI: 10.1038/s41598-018-23492-2
Abstract: We aim to identify the key protein interaction networks and implicated pathways of BK virus nephropathy (BKVN) via bioinformatic methods. The microarray data GSE75693 of 30 patients with stable kidney transplantation and 15 with BKVN… read more here.
Keywords: protein; protein interaction; interaction networks; key protein ... See more keywords
Naturalistic observations of multiteam interaction networks: Implications for cognition in crisis management teams.
Sign Up to like & getrecommendations! Published in 2023 at "Ergonomics"
DOI: 10.1080/00140139.2023.2221418
Abstract: Interaction has been recognized as an essential lens to understand how cognition is formed in a complex adaptive team such as a multidisciplinary crisis management team (CMT). However, little is known about how interactions within… read more here.
Keywords: interaction; cognition; crisis management; multiteam interaction ... See more keywords