An SNP panel for the analysis of paternally inherited alleles in maternal plasma using ion Torrent PGM
Sign Up to like & getrecommendations! Published in 2017 at "International Journal of Legal Medicine"
DOI: 10.1007/s00414-017-1594-6
Abstract: Researchers have sought to develop an effective protocol for paternity analysis using cell-free DNA (cfDNA) in maternal plasma. The use of massively parallel sequencing (MPS) technology for SNP testing is attractive because of its high-throughput… read more here.
Keywords: maternal plasma; using ion; plasma; snp panel ... See more keywords
NGS tools for traceability in candies as high processed food products: Ion Torrent PGM versus conventional PCR-cloning.
Sign Up to like & getrecommendations! Published in 2017 at "Food chemistry"
DOI: 10.1016/j.foodchem.2016.07.121
Abstract: The Next Generation Sequencing methodologies are considered the next step within DNA-based methods and their applicability in different fields is being evaluated. Here, we tested the usefulness of the Ion Torrent Personal Genome Machine (PGM)… read more here.
Keywords: traceability; pcr cloning; high processed; food ... See more keywords
Using Ion Torrent sequencing to study genetic mutation profiles of fatal thyroid cancers.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of the Formosan Medical Association = Taiwan yi zhi"
DOI: 10.1016/j.jfma.2017.05.007
Abstract: BACKGROUND/PURPOSE Surgery followed by radioiodine is a mainstay of treatment for thyroid cancers of follicular origins. However, about 5% of the thyroid cancers are non-operable and/or radioiodine-refractory diseases, which are either locally advanced or metastatic… read more here.
Keywords: mutation; fatal thyroid; thyroid cancers; ion torrent ... See more keywords
Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses.
Sign Up to like & getrecommendations! Published in 2020 at "Journal of virological methods"
DOI: 10.1016/j.jviromet.2020.113865
Abstract: Next-generation sequencing is a powerful tool for virological surveillance. While Illumina® and Ion Torrent® sequencing platforms are used extensively for generating viral RNA genome sequences, there is limited data comparing different platforms. The Illumina MiSeq,… read more here.
Keywords: ion; illumina miseq; ion torrent;
Ion torrent-based nasopharyngeal swab metatranscriptomics in COVID-19
Sign Up to like & getrecommendations! Published in 2020 at "Journal of Virological Methods"
DOI: 10.1016/j.jviromet.2020.113888
Abstract: Abstract Herein, we describe the detection of a SARS-CoV-2 genome through metatranscriptome next-generation sequencing directly from the nasopharyngeal swab of a suspected case of local transmission of Covid-19, in Brazil. Depletion of human ribosomal RNA… read more here.
Keywords: nasopharyngeal swab; metatranscriptomics covid; swab metatranscriptomics; based nasopharyngeal ... See more keywords
Evaluation of the Ion Torrent PGM sequencing workflow for the routine rapid detection of BRCA1 and BRCA2 germline mutations.
Sign Up to like & getrecommendations! Published in 2017 at "Experimental and molecular pathology"
DOI: 10.1016/j.yexmp.2017.03.001
Abstract: PURPOSE Conventional methods used to identify BRCA1/2 germline mutations in hereditary cancers are time-consuming and expensive, due to the large size of the genes. The recent introduction of next generation sequencing (NGS) benchtop platforms is… read more here.
Keywords: ion; torrent pgm; brca1; ion torrent ... See more keywords
Evaluation of Ion Torrent sequencing technology for rapid clinical human leucocyte antigen typing
Sign Up to like & getrecommendations! Published in 2018 at "International Journal of Immunogenetics"
DOI: 10.1111/iji.12378
Abstract: The development of techniques to define the human leucocyte antigen (HLA) region has proven to be challenging due to its high level of polymorphism. Within a clinical laboratory, a technique for high‐resolution HLA typing, which… read more here.
Keywords: human leucocyte; hla drb1; ion torrent; hla ... See more keywords
Comparison of somatic variant detection algorithms using Ion Torrent targeted deep sequencing data
Sign Up to like & getrecommendations! Published in 2019 at "BMC Medical Genomics"
DOI: 10.1186/s12920-019-0636-y
Abstract: The application of next-generation sequencing in cancer has revealed the genomic landscape of many tumour types and is nowadays routinely used in research and clinical settings. Multiple algorithms have been developed to detect somatic variation… read more here.
Keywords: sequencing data; somatic variant; torrent; deep sequencing ... See more keywords
Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome
Sign Up to like & getrecommendations! Published in 2019 at "PLoS ONE"
DOI: 10.1371/journal.pone.0210356
Abstract: Transcriptome analysis is widely used in plant biology research to explore gene expression across a large variety of biological contexts such as those related to environmental stress and plant-pathogen interaction. Currently, next generation sequencing platforms… read more here.
Keywords: holm oak; quercus ilex; oak quercus; ion ... See more keywords
Targeted re-sequencing of F8, F9 and VWF: Characterization of Ion Torrent data and clinical implications for mutation screening
Sign Up to like & getrecommendations! Published in 2019 at "PLoS ONE"
DOI: 10.1371/journal.pone.0216179
Abstract: Mutations are not identified in ~5% of hemophilia A and 10–35% of type 1 VWD patients. The bleeding tendency also varies among patients carrying the same causative mutation, potentially indicating variants in additional genes modifying… read more here.
Keywords: mutation; reference alleles; ion torrent;