An improved approach for calculating energy landscape of gene networks from moment equations.
Sign Up to like & getrecommendations! Published in 2023 at "Chaos"
DOI: 10.1063/5.0128345
Abstract: The energy landscape theory has widely been applied to study the stochastic dynamics of biological systems. Different methods have been developed to quantify the energy landscape for gene networks, e.g., using Gaussian approximation (GA) approach… read more here.
Keywords: landscape gene; energy landscape; gene networks; landscape ... See more keywords
The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments
Sign Up to like & getrecommendations! Published in 2022 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msac198
Abstract: Abstract Subgenome dominance after whole-genome duplication (WGD) has been observed in many plant species. However, the degree to which the chromatin environment affects this bias has not been explored. Here, we compared the dominant subgenome… read more here.
Keywords: landscape gene; gene dominance; maize1; heterogeneity landscape ... See more keywords
A landscape of gene regulation in the parasitic amoebozoa Entamoeba spp
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DOI: 10.1371/journal.pone.0271640
Abstract: Entamoeba are amoeboid extracellular parasites that represent an important group of organisms for which the regulatory networks must be examined to better understand how genes and functional processes are interrelated. In this work, we inferred… read more here.
Keywords: landscape gene; entamoeba; gene regulation; metabolic process ... See more keywords
Genomewide landscape of gene–metabolome associations in Escherichia coli
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DOI: 10.15252/msb.20167150
Abstract: Metabolism is one of the best‐understood cellular processes whose network topology of enzymatic reactions is determined by an organism's genome. The influence of genes on metabolite levels, however, remains largely unknown, particularly for the many… read more here.
Keywords: genomewide landscape; escherichia coli; landscape gene; gene metabolome ... See more keywords