Full-length transcriptome of anadromous Coilia nasus using single molecule real-time (SMRT) sequencing
Sign Up to like & getrecommendations! Published in 2020 at "Aquaculture and Fisheries"
DOI: 10.1016/j.aaf.2020.08.006
Abstract: Abstract This study was designed to generate the full-length transcriptome of Coilia nasus using single-molecule long read isoform sequencing (SMRT-seq) technology. RNAs of brains, ovaries, and testes of C. nasus conditioned in both seawater and… read more here.
Keywords: full length; length transcriptome; nasus using; coilia nasus ... See more keywords
Full-length transcriptome annotation of a pyrosome, Pyrosoma atlanticum (Chordata, Thaliacea)
Sign Up to like & getrecommendations! Published in 2024 at "Scientific Data"
DOI: 10.1038/s41597-024-04251-7
Abstract: Pyrosomes represent a group of marine holozooplankton. They do not exist as individual entities but as intricate colonies comprising numerous zooids, well-known for their bioluminescent properties. Pyrosomes inhabit most oceanic waters spanning tropical to temperate… read more here.
Keywords: length; length transcriptome; full length; pyrosoma atlanticum ... See more keywords
Full-length transcriptome sequencing analysis and development of EST-SSR markers for the endangered species Populus wulianensis
Sign Up to like & getrecommendations! Published in 2020 at "Scientific Reports"
DOI: 10.1038/s41598-020-73289-5
Abstract: Populus wulianensis is an endangered species endemic to Shandong Province, China. Despite the economic and ornamental value of this species, few genomics and genetic studies have been performed. In this study, we performed a relevant… read more here.
Keywords: full length; length transcriptome; analysis; transcriptome sequencing ... See more keywords
Full-length transcriptome sequencing of Arabidopsis plants provided new insights into the autophagic regulation of photosynthesis
Sign Up to like & getrecommendations! Published in 2024 at "Scientific Reports"
DOI: 10.1038/s41598-024-65555-7
Abstract: Autophagy is a highly conserved eukaryotic pathway and plays a crucial role in cell survival under stress conditions. Here, we applied a full-length transcriptome approach to study an Arabidopsis autophagy mutant (atg5-1) subjected to nitrogen-starvation,… read more here.
Keywords: length transcriptome; photosynthesis; starvation; full length ... See more keywords
Identification of reproduction-related genes in the hypothalamus of sheep (Ovis aries) using the nanopore full-length transcriptome sequencing technology
Sign Up to like & getrecommendations! Published in 2024 at "Scientific Reports"
DOI: 10.1038/s41598-024-79140-5
Abstract: The hypothalamus is the coordination center of the sheep (Ovis aries) endocrine system and plays an important role in the reproductive processes of sheep. However, the specific mechanism by which the hypothalamus affects sheep reproductive… read more here.
Keywords: length transcriptome; ovis aries; sheep ovis; full length ... See more keywords
Profiling of the full-length transcriptome in abdominal aortic aneurysm using nanopore-based direct RNA sequencing
Sign Up to like & getrecommendations! Published in 2022 at "Open Biology"
DOI: 10.1098/rsob.210172
Abstract: Abdominal aortic aneurysm (AAA) is a common and serious disease with a high mortality rate, but its genetic determinants have not been fully identified. In this feasibility study, we aimed to elucidate the transcriptome profile… read more here.
Keywords: abdominal aortic; full length; length transcriptome; aortic aneurysm ... See more keywords
Full-length transcriptome sequencing reveals extreme incomplete annotation of the goat genome.
Sign Up to like & getrecommendations! Published in 2023 at "Animal genetics"
DOI: 10.1111/age.13311
Abstract: Despite recent advances in generating high-quality reference genome assemblies, the genome sequences for most livestock species, including goats, are still poorly annotated. Single-molecule long-read sequencing has greatly facilitated gene annotation by obtaining full-length transcripts. In… read more here.
Keywords: full length; annotation goat; goat genome; length transcriptome ... See more keywords
Identification of Dominant Transcripts in Oxidative Stress Response by a Full-Length Transcriptome Analysis
Sign Up to like & getrecommendations! Published in 2020 at "Molecular and Cellular Biology"
DOI: 10.1128/mcb.00472-20
Abstract: Our body responds to environmental stress by changing the expression levels of a series of cytoprotective enzymes/proteins through multilayered regulatory mechanisms, including the KEAP1-NRF2 system. While NRF2 upregulates the expression of many cytoprotective genes, there… read more here.
Keywords: full length; stress; stress response; length transcriptome ... See more keywords
Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line
Sign Up to like & getrecommendations! Published in 2019 at "BMC Genomics"
DOI: 10.1186/s12864-019-6416-4
Abstract: BackgroundAgropyron cristatum (L.) Gaertn. (2n = 4x = 28; genomes PPPP) is a wild relative of common wheat (Triticum aestivum L.) and provides many desirable genetic resources for wheat improvement. However, there is still a lack of reference genome… read more here.
Keywords: wheat; full length; cristatum; length transcriptome ... See more keywords
Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe
Sign Up to like & getrecommendations! Published in 2019 at "BMC Plant Biology"
DOI: 10.1186/s12870-019-1968-7
Abstract: BackgroundGossypium australe F. Mueller (2n = 2x = 26, G2 genome) possesses valuable characteristics. For example, the delayed gland morphogenesis trait causes cottonseed protein and oil to be edible while retaining resistance to biotic stress. However, the lack of… read more here.
Keywords: iso seq; alternative splicing; full length; length transcriptome ... See more keywords
A full-length transcriptome and gene expression analysis reveal genes and molecular elements expressed during seed development in Gnetum luofuense
Sign Up to like & getrecommendations! Published in 2020 at "BMC Plant Biology"
DOI: 10.1186/s12870-020-02729-1
Abstract: Background Gnetum is an economically important tropical and subtropical gymnosperm genus with various dietary, industrial and medicinal uses. Many carbohydrates, proteins and fibers accumulate during the ripening of Gnetum seeds. However, the molecular mechanisms related… read more here.
Keywords: seed; full length; length transcriptome; gnetum ... See more keywords