Full-length transcriptome of anadromous Coilia nasus using single molecule real-time (SMRT) sequencing
Sign Up to like & getrecommendations! Published in 2020 at "Aquaculture and Fisheries"
DOI: 10.1016/j.aaf.2020.08.006
Abstract: Abstract This study was designed to generate the full-length transcriptome of Coilia nasus using single-molecule long read isoform sequencing (SMRT-seq) technology. RNAs of brains, ovaries, and testes of C. nasus conditioned in both seawater and… read more here.
Keywords: full length; length transcriptome; nasus using; coilia nasus ... See more keywords
Full-length transcriptome sequencing analysis and development of EST-SSR markers for the endangered species Populus wulianensis
Sign Up to like & getrecommendations! Published in 2020 at "Scientific Reports"
DOI: 10.1038/s41598-020-73289-5
Abstract: Populus wulianensis is an endangered species endemic to Shandong Province, China. Despite the economic and ornamental value of this species, few genomics and genetic studies have been performed. In this study, we performed a relevant… read more here.
Keywords: full length; length transcriptome; analysis; transcriptome sequencing ... See more keywords
Profiling of the full-length transcriptome in abdominal aortic aneurysm using nanopore-based direct RNA sequencing
Sign Up to like & getrecommendations! Published in 2022 at "Open Biology"
DOI: 10.1098/rsob.210172
Abstract: Abdominal aortic aneurysm (AAA) is a common and serious disease with a high mortality rate, but its genetic determinants have not been fully identified. In this feasibility study, we aimed to elucidate the transcriptome profile… read more here.
Keywords: abdominal aortic; full length; length transcriptome; aortic aneurysm ... See more keywords
Full-length transcriptome sequencing reveals extreme incomplete annotation of the goat genome.
Sign Up to like & getrecommendations! Published in 2023 at "Animal genetics"
DOI: 10.1111/age.13311
Abstract: Despite recent advances in generating high-quality reference genome assemblies, the genome sequences for most livestock species, including goats, are still poorly annotated. Single-molecule long-read sequencing has greatly facilitated gene annotation by obtaining full-length transcripts. In… read more here.
Keywords: full length; annotation goat; goat genome; length transcriptome ... See more keywords
Identification of Dominant Transcripts in Oxidative Stress Response by a Full-Length Transcriptome Analysis
Sign Up to like & getrecommendations! Published in 2020 at "Molecular and Cellular Biology"
DOI: 10.1128/mcb.00472-20
Abstract: Our body responds to environmental stress by changing the expression levels of a series of cytoprotective enzymes/proteins through multilayered regulatory mechanisms, including the KEAP1-NRF2 system. While NRF2 upregulates the expression of many cytoprotective genes, there… read more here.
Keywords: full length; stress; stress response; length transcriptome ... See more keywords
Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line
Sign Up to like & getrecommendations! Published in 2019 at "BMC Genomics"
DOI: 10.1186/s12864-019-6416-4
Abstract: BackgroundAgropyron cristatum (L.) Gaertn. (2n = 4x = 28; genomes PPPP) is a wild relative of common wheat (Triticum aestivum L.) and provides many desirable genetic resources for wheat improvement. However, there is still a lack of reference genome… read more here.
Keywords: wheat; full length; cristatum; length transcriptome ... See more keywords
Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe
Sign Up to like & getrecommendations! Published in 2019 at "BMC Plant Biology"
DOI: 10.1186/s12870-019-1968-7
Abstract: BackgroundGossypium australe F. Mueller (2n = 2x = 26, G2 genome) possesses valuable characteristics. For example, the delayed gland morphogenesis trait causes cottonseed protein and oil to be edible while retaining resistance to biotic stress. However, the lack of… read more here.
Keywords: iso seq; alternative splicing; full length; length transcriptome ... See more keywords
A full-length transcriptome and gene expression analysis reveal genes and molecular elements expressed during seed development in Gnetum luofuense
Sign Up to like & getrecommendations! Published in 2020 at "BMC Plant Biology"
DOI: 10.1186/s12870-020-02729-1
Abstract: Background Gnetum is an economically important tropical and subtropical gymnosperm genus with various dietary, industrial and medicinal uses. Many carbohydrates, proteins and fibers accumulate during the ripening of Gnetum seeds. However, the molecular mechanisms related… read more here.
Keywords: seed; full length; length transcriptome; gnetum ... See more keywords
Single-molecule real-time sequencing of the full-length transcriptome of loquat under low-temperature stress
Sign Up to like & getrecommendations! Published in 2020 at "PLoS ONE"
DOI: 10.1371/journal.pone.0238942
Abstract: In this study, third-generation full-length (FL) transcriptome sequencing was performed of loquat using single-molecule real-time(SMRT) sequencing from the pooled cDNA of embryos of young loquat fruit under different low temperatures (three biological replicates for treatments… read more here.
Keywords: loquat; single molecule; full length; length transcriptome ... See more keywords
Full-Length Transcriptome Analysis of Plasmodium falciparum by Single-Molecule Long-Read Sequencing
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Cellular and Infection Microbiology"
DOI: 10.3389/fcimb.2021.631545
Abstract: Malaria, an infectious disease caused by Plasmodium parasites, still accounts for amounts of deaths annually in last decades. Despite the significance of Plasmodium falciparum as a model organism of malaria parasites, our understanding of gene… read more here.
Keywords: length; plasmodium falciparum; full length; length transcriptome ... See more keywords
SMRT Sequencing of the Full-Length Transcriptome of the Coelomactra antiquata
Sign Up to like & getrecommendations! Published in 2021 at "Frontiers in Genetics"
DOI: 10.3389/fgene.2021.741243
Abstract: Coelomactra antiquata is an important aquatic economic shellfish with high medicinal value. However, because C. antiquata has no reference genome, a lot of molecular biology research cannot be carried out, so the analysis of its… read more here.
Keywords: length; full length; length transcriptome; coelomactra antiquata ... See more keywords