Stability conditions of chemical networks in a linear framework
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DOI: 10.1088/1367-2630/ae2153
Abstract: Autocatalytic chemical reaction networks can collectively replicate or maintain their constituents despite degradation reactions only above a certain threshold, which we refer to as the decay threshold. When the chemical network has a Jacobian matrix… read more here.
Keywords: conditions chemical; linear framework; chemical networks; decay threshold ... See more keywords
The linear framework: using graph theory to reveal the algebra and thermodynamics of biomolecular systems
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DOI: 10.1098/rsfs.2022.0013
Abstract: The linear framework uses finite, directed graphs with labelled edges to model biomolecular systems. Graph vertices represent biochemical species or molecular states, edges represent reactions or transitions and labels represent rates. The graph yields a… read more here.
Keywords: linear framework; graph theory; biomolecular systems; thermodynamics ... See more keywords