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Published in 2022 at "Journal of Computational Chemistry"
DOI: 10.1002/jcc.26796
Abstract: Due to the role of loops in protein function, loop modeling is an important problem in computational biology. We present a new approach to loop modeling based on a combinatorial version of distance geometry, where…
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Keywords:
protein loop;
geometry;
loop modeling;
geometry protein ... See more keywords
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2
Published in 2023 at "IEEE/ACM transactions on computational biology and bioinformatics"
DOI: 10.1109/tcbb.2023.3264899
Abstract: The functions of proteins are largely determined by their three-dimensional (3D) structures. Loop modeling tries to predict the conformation of a relatively short stretch of protein backbone and sidechain. It is a difficult problem due…
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Keywords:
loop modeling;
loop;
protein loop;
using alphafold2 ... See more keywords