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Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1294-1_3
Abstract: Whole-genome bisulfite sequencing (WGBS) is a popular method for characterizing cytosine methylation because it is fully quantitative and has base-pair resolution. While WGBS is prohibitively expensive for experiments involving many samples, low-coverage WGBS can accurately…
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Keywords:
genome bisulfite;
low coverage;
methylation;
wgbs ... See more keywords
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Published in 2021 at "American journal of human genetics"
DOI: 10.1016/j.ajhg.2021.03.012
Abstract: Genetic studies in underrepresented populations identify disproportionate numbers of novel associations. However, most genetic studies use genotyping arrays and sequenced reference panels that best capture variation most common in European ancestry populations. To compare data…
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Keywords:
low coverage;
variation;
coverage sequencing;
coverage ... See more keywords
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Published in 2020 at "Scientific Reports"
DOI: 10.1038/s41598-020-75387-w
Abstract: Although ancient DNA data have become increasingly more important in studies about past populations, it is often not feasible or practical to obtain high coverage genomes from poorly preserved samples. While methods of accurate genotype…
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Keywords:
low coverage;
genotype imputation;
imputation;
ancient genomes ... See more keywords
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Published in 2021 at "Scientific Reports"
DOI: 10.1038/s41598-021-83436-1
Abstract: Low-coverage whole-genome sequencing (LC-WGS) can provide insight into oncogenic molecular changes. Serum extracellular vesicles (EV) represent a novel liquid biopsy source of tumoral DNA. This study compared copy number alteration (CNA) profiles generated from LC-WGS…
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Keywords:
coverage whole;
low coverage;
whole genome;
range ... See more keywords
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Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac824
Abstract: Abstract Motivation Oxford Nanopore sequencing has great potential and advantages in population-scale studies. Due to the cost of sequencing, the depth of whole-genome sequencing for per individual sample must be small. However, the existing single…
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Keywords:
coverage;
sequencing data;
coverage nanopore;
nanopore sequencing ... See more keywords
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Published in 2022 at "Insect science"
DOI: 10.1111/1744-7917.13034
Abstract: The halictid genus Lasioglossum, as one of the most species-rich bee groups with persistently contentious subgeneric boundaries, is one of the most challenging bee groups from a systematic standpoint. An enduring question is the relationship…
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Keywords:
rostrohalictus;
lasioglossum;
low coverage;
status ... See more keywords
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Published in 2021 at "Molecular ecology resources"
DOI: 10.1111/1755-0998.13551
Abstract: Genomic assignment tests can provide important diagnostic biological characteristics, such as population of origin or ecotype. Yet, assignment tests often rely on moderate- to high-coverage sequence data that can be difficult to obtain for fields…
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Keywords:
extremely low;
low coverage;
sequence data;
coverage ... See more keywords
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Published in 2023 at "Evolutionary Applications"
DOI: 10.1111/eva.13552
Abstract: Blue mussels from the genus Mytilus are an abundant component of the benthic community, found in the high latitude habitats. These foundation species are relevant to the aquaculture industry, with over 2 million tonnes produced…
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Keywords:
snp array;
density snp;
medium density;
mussel ... See more keywords
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Published in 2021 at "Journal of Geriatric Oncology"
DOI: 10.11648/j.jgo.20210906.12
Abstract: Introduction: Malaria during pregnancy is a major public health concern in most endemic areas, including Benin. To overcome this, the World Health Organization (WHO) recommends several prevention strategies, including the administration of sulfadoxine-pyrimethamine (SP) during…
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Keywords:
low coverage;
associated low;
pregnant women;
coverage ... See more keywords
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Published in 2018 at "BMC Genomics"
DOI: 10.1186/s12864-018-4489-0
Abstract: BackgroundRuns of Homozygosity (ROH) are genomic regions where identical haplotypes are inherited from each parent. Since their first detection due to technological advances in the late 1990s, ROHs have been shedding light on human population…
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Keywords:
snp array;
roh;
low coverage;
homozygosity ... See more keywords
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Published in 2020 at "BMC Medical Genomics"
DOI: 10.1186/s12920-020-0726-x
Abstract: Background Intellectual disability (ID) is a heterogeneous neurodevelopmental disorder with a complex genetic underpinning in its etiology. Chromosome microarray (CMA) is recommended as the first-tier diagnostic test for ID due to high detection rate of…
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Keywords:
low coverage;
whole genome;
diagnostic test;
coverage sequencing ... See more keywords