Inpactor2: a software based on deep learning to identify and classify LTR-retrotransposons in plant genomes
Sign Up to like & getrecommendations! Published in 2022 at "Briefings in Bioinformatics"
DOI: 10.1093/bib/bbac511
Abstract: Abstract LTR-retrotransposons are the most abundant repeat sequences in plant genomes and play an important role in evolution and biodiversity. Their characterization is of great importance to understand their dynamics. However, the identification and classification… read more here.
Keywords: software; ltr retrotransposons; plant genomes; deep learning ... See more keywords
Embryonic LTR retrotransposons supply promoter modules to somatic tissues.
Sign Up to like & getrecommendations! Published in 2021 at "Genome research"
DOI: 10.1101/gr.275354.121
Abstract: Long terminal repeat (LTR) retrotransposons are widely distributed across the human genome. They have accumulated through retroviral integration into germline DNA and are latent genetic modules. Active LTR promoters are observed in germline cells; however,… read more here.
Keywords: retrotransposons supply; ltr retrotransposons; promoter modules; embryonic ltr ... See more keywords
The identification and characterization of genome-wide long terminal repeat retrotransposon provide an insight into elucidating the trait evolution of five Rhododendron species.
Sign Up to like & getrecommendations! Published in 2023 at "Plant biology"
DOI: 10.1111/plb.13532
Abstract: Rhododendron is well-known for its beauty and colorful corolla. Although some high-quality whole-genome sequencing of Rhododendron has been completed, there is lack of studies on long terminal repeat (LTR) retrotransposons in Rhododendron, which limits our… read more here.
Keywords: retrotransposon; rhododendron; terminal repeat; ltr retrotransposons ... See more keywords
Quadruplex DNA in long terminal repeats in maize LTR retrotransposons inhibits the expression of a reporter gene in yeast
Sign Up to like & getrecommendations! Published in 2018 at "BMC Genomics"
DOI: 10.1186/s12864-018-4563-7
Abstract: BackgroundMany studies have shown that guanine-rich DNA sequences form quadruplex structures (G4) in vitro but there is scarce evidence of guanine quadruplexes in vivo. The majority of potential quadruplex-forming sequences (PQS) are located in transposable… read more here.
Keywords: reporter gene; terminal repeats; dna; ltr retrotransposons ... See more keywords
Comparative analysis of miniature inverted–repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons in six Citrus species
Sign Up to like & getrecommendations! Published in 2019 at "BMC Plant Biology"
DOI: 10.1186/s12870-019-1757-3
Abstract: BackgroundMiniature inverted-repeat transposable elements (MITEs) and long terminal repeat (LTR) retrotransposons are ubiquitous in plants genomes, and highly important in their evolution and diversity. However, their mechanisms of insertion/amplification and roles in Citrus genome’s evolution/diversity… read more here.
Keywords: repeat transposable; ltr retrotransposons; repeat; inverted repeat ... See more keywords
Examining non-LTR retrotransposons in the context of the evolving primate brain
Sign Up to like & getrecommendations! Published in 2017 at "BMC Biology"
DOI: 10.1186/s12915-017-0409-z
Abstract: Researchers have long sought to understand the genetic basis of the cognitive differences between primates, with particular focus on the human brain. Although all mutational types have worked in concert with evolutionary forces to generate… read more here.
Keywords: ltr retrotransposons; human brain; primate; examining non ... See more keywords
Genomic and evolutionary diversity of LTR retrotransposons in date palm (Phoenix dactylifera)
Sign Up to like & getrecommendations! Published in 2019 at "Pakistan Journal of Botany"
DOI: 10.30848/pjb2019-5(51)
Abstract: Of the transposable elements (TEs), the retrotransposons are the most copious elements identified from many sequenced genomes. They have played a major role in genome evolution, rearrangement and expansions based on their copy and paste… read more here.
Keywords: ltr; ltr retrotransposons; genomic evolutionary; phoenix dactylifera ... See more keywords
Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2022.1064847
Abstract: Long terminal repeat retrotransposons (LTR retrotransposons) are the most abundant group of mobile genetic elements in eukaryotic genomes and are essential in organizing genomic architecture and phenotypic variations. The diverse families of retrotransposons are related… read more here.
Keywords: heat stress; retrotransposons continuous; ltr retrotransposons; plant ... See more keywords
PlantLTRdb: An interactive database for 195 plant species LTR-retrotransposons
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2023.1134627
Abstract: LTR-retrotransposons (LTR-RTs) are a large group of transposable elements that replicate through an RNA intermediate and alter genome structure. The activities of LTR-RTs in plant genomes provide helpful information about genome evolution and gene function.… read more here.
Keywords: 195 plant; ltr retrotransposons; ltr rts; database 195 ... See more keywords
The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch
Sign Up to like & getrecommendations! Published in 2019 at "Genes"
DOI: 10.3390/genes10040301
Abstract: Avian genomes have perplexed researchers by being conservative in both size and rearrangements, while simultaneously holding the blueprints for a massive species radiation during the last 65 million years (My). Transposable elements (TEs) in bird… read more here.
Keywords: zebra finch; ltr retrotransposons; cordon bleu; capped cordon ... See more keywords
Impact of LTR-Retrotransposons on Genome Structure, Evolution, and Function in Curcurbitaceae Species
Sign Up to like & getrecommendations! Published in 2022 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms231710158
Abstract: Long terminal repeat (LTR)-retrotransposons (LTR-RTs) comprise a major portion of many plant genomes and may exert a profound impact on genome structure, function, and evolution. Although many studies have focused on these elements in an… read more here.
Keywords: function; ltr retrotransposons; ltr rts; genome structure ... See more keywords