Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients
Sign Up to like & getrecommendations! Published in 2020 at "Scientific Data"
DOI: 10.1038/s41597-020-00696-8
Abstract: We present manually curated transcriptomics data of psoriasis and atopic dermatitis patients retrieved from the NCBI Gene Expression Omnibus and EBI ArrayExpress repositories. We collected 39 transcriptomics datasets, deriving from DNA microarrays and RNA-Sequencing technologies,… read more here.
Keywords: manually curated; atopic dermatitis; transcriptomics datasets; dermatitis patients ... See more keywords
dbCID: a manually curated resource for exploring the driver indels in human cancer
Sign Up to like & getrecommendations! Published in 2019 at "Briefings in bioinformatics"
DOI: 10.1093/bib/bby059
Abstract: While recent advances in next-generation sequencing technologies have enabled the creation of a multitude of databases in cancer genomic research, there is no comprehensive database focusing on the annotation of driver indels (insertions and deletions)… read more here.
Keywords: cancer; dbcid manually; driver indels; manually curated ... See more keywords
FireProtDB: database of manually curated protein stability data
Sign Up to like & getrecommendations! Published in 2021 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkaa981
Abstract: Abstract The majority of naturally occurring proteins have evolved to function under mild conditions inside the living organisms. One of the critical obstacles for the use of proteins in biotechnological applications is their insufficient stability… read more here.
Keywords: fireprotdb database; manually curated; database manually; database ... See more keywords
FerrDb V2: update of the manually curated database of ferroptosis regulators and ferroptosis-disease associations
Sign Up to like & getrecommendations! Published in 2022 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkac935
Abstract: Abstract Ferroptosis is a mode of regulated cell death characterized by iron-dependent accumulation of lipid peroxidation. It is closely linked to the pathophysiological processes in many diseases. Since our publication of the first ferroptosis database… read more here.
Keywords: ferroptosis regulators; disease associations; ferroptosis disease; ferroptosis ... See more keywords
Exposome-Explorer: a manually-curated database on biomarkers of exposure to dietary and environmental factors
Sign Up to like & getrecommendations! Published in 2017 at "Nucleic Acids Research"
DOI: 10.1093/nar/gkw980
Abstract: Exposome-Explorer (http://exposome-explorer.iarc.fr) is the first database dedicated to biomarkers of exposure to environmental risk factors. It contains detailed information on the nature of biomarkers, their concentrations in various human biospecimens, the study population where measured… read more here.
Keywords: explorer; biomarkers exposure; manually curated; explorer manually ... See more keywords
FreshOmics: A manually curated and standardized –omics database for investigating freshwater microbiomes
Sign Up to like & getrecommendations! Published in 2022 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.13692
Abstract: Freshwater is a critical resource for human survival but severely threatened by anthropogenic activities and climate change. These changes strongly impact the abundance and diversity of the microbial communities which are key players in the… read more here.
Keywords: freshwater; curated standardized; omics database; microbial communities ... See more keywords