mmquant: how to count multi-mapping reads?
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DOI: 10.1186/s12859-017-1816-4
Abstract: BackgroundRNA-Seq is currently used routinely, and it provides accurate information on gene transcription. However, the method cannot accurately estimate duplicated genes expression. Several strategies have been previously used (drop duplicated genes, distribute uniformly the reads,… read more here.
Keywords: multi mapping; mapping reads; mmquant count; duplicated genes ... See more keywords
Assessing the impact of exact reads on reducing the error rate of read mapping
Sign Up to like & getrecommendations! Published in 2018 at "BMC Bioinformatics"
DOI: 10.1186/s12859-018-2432-7
Abstract: BackgroundNowadays, according to valuable resources of high-quality genome sequences, reference-based assembly methods with high accuracy and efficiency are strongly required. Many different algorithms have been designed for mapping reads onto a genome sequence which try… read more here.
Keywords: mapping reads; read mapping; error rate; rate ... See more keywords