APSCALE: advanced pipeline for simple yet comprehensive analyses of DNA metabarcoding data
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac588
Abstract: Abstract Summary DNA metabarcoding is an emerging approach to assess and monitor biodiversity worldwide and consequently the number and size of data sets increases exponentially. To date, no published DNA metabarcoding data processing pipeline exists… read more here.
Keywords: advanced pipeline; dna metabarcoding; pipeline; gui ... See more keywords
TaxonTableTools: A comprehensive, platformâindependent graphical user interface software to explore and visualise DNA metabarcoding data
Sign Up to like & getrecommendations! Published in 2021 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.13358
Abstract: DNA metabarcoding is increasingly used as a tool to assess biodiversity in research and environmental management. Powerful analysis software exists to process raw data. However, the translation of sequence read data into biological information and… read more here.
Keywords: graphical user; user interface; dna metabarcoding; metabarcoding data ... See more keywords
Signal and noise in metabarcoding data
Sign Up to like & getrecommendations! Published in 2023 at "PLOS ONE"
DOI: 10.1371/journal.pone.0285674
Abstract: Metabarcoding is a powerful molecular tool for simultaneously surveying hundreds to thousands of species from a single sample, underpinning microbiome and environmental DNA (eDNA) methods. Deriving quantitative estimates of underlying biological communities from metabarcoding is… read more here.
Keywords: noise metabarcoding; metabarcoding data; amplification; signal noise ... See more keywords