Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
Sign Up to like & getrecommendations! Published in 2017 at "Nature Biotechnology"
DOI: 10.1038/nbt.3703
Abstract: Genome-scale metabolic models derived from human gut metagenomic data can be used as a framework to elucidate how microbial communities modulate human metabolism and health. We present AGORA (assembly of gut organisms through reconstruction and… read more here.
Keywords: genome scale; human gut; metabolic reconstructions; generation genome ... See more keywords
MetaboAnnotator: an efficient toolbox to annotate metabolites in genome-scale metabolic reconstructions
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac596
Abstract: Abstract Motivation Genome-scale metabolic reconstructions have been assembled for thousands of organisms using a wide range of tools. However, metabolite annotations, required to compare and link metabolites between reconstructions, remain incomplete. Here, we aim to… read more here.
Keywords: scale metabolic; metabolic reconstructions; efficient toolbox; metaboannotator efficient ... See more keywords