Using metabolome data for mathematical modeling of plant metabolic systems.
Sign Up to like & getrecommendations! Published in 2018 at "Current opinion in biotechnology"
DOI: 10.1016/j.copbio.2018.08.005
Abstract: Plant metabolism is characterized by a wide diversity of metabolites, with systems far more complicated than those of microorganisms. Mathematical modeling is useful for understanding dynamic behaviors of plant metabolic systems for metabolic engineering. Time-series… read more here.
Keywords: plant; mathematical modeling; metabolome data; metabolic systems ... See more keywords
A systematic benchmark of integrative strategies for microbiome-metabolome data
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DOI: 10.1038/s42003-025-08515-9
Abstract: The rapid advancement of high-throughput sequencing technologies has enabled the integration of various omic layers into computational frameworks. Among these, metagenomics and metabolomics are increasingly studied for their roles in complex diseases. However, no standard… read more here.
Keywords: systematic benchmark; benchmark integrative; strategies microbiome; microbiome metabolome ... See more keywords
Metabolic flux analysis for metabolome data validation of naturally xylose-fermenting yeasts
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DOI: 10.1186/s12896-019-0548-0
Abstract: BackgroundEfficient xylose fermentation still demands knowledge regarding xylose catabolism. In this study, metabolic flux analysis (MFA) and metabolomics were used to improve our understanding of xylose metabolism. Thus, a stoichiometric model was constructed to simulate… read more here.
Keywords: metabolic flux; metabolome data; flux analysis; data validation ... See more keywords