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   Articles with "metagenome sequencing" as a keyword



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Corrigendum: Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids

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recommendations! Published in 2017 at "Scientific Data"

DOI: 10.1038/sdata.2017.80

Abstract: This corrects the article DOI: 10.1038/sdata.2017.37. read more here.

Keywords: sequencing microbial; corrigendum metagenome; genomes juan; microbial genomes ... See more keywords
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A case study of salivary microbiome in smokers and non-smokers in Hungary: analysis by shotgun metagenome sequencing

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recommendations! Published in 2020 at "Journal of Oral Microbiology"

DOI: 10.1080/20002297.2020.1773067

Abstract: ABSTRACT Objective To investigate the role of cigarette smoking in disease-development through altering the composition of the oral microbial community. Periodontitis and oral cancer are highly prevalent in Hungary; therefore, the salivary microbiome of smoker… read more here.

Keywords: non smokers; salivary microbiome; current smokers; metagenome sequencing ... See more keywords

ViBE: a hierarchical BERT model to identify eukaryotic viruses using metagenome sequencing data

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recommendations! Published in 2022 at "Briefings in bioinformatics"

DOI: 10.1093/bib/bbac204

Abstract: Viruses are ubiquitous in humans and various environments and continually mutate themselves. Identifying viruses in an environment without cultivation is challenging; however, promoting the screening of novel viruses and expanding the knowledge of viral space… read more here.

Keywords: metagenome sequencing; bert model; sequencing data; viruses using ... See more keywords

Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing

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recommendations! Published in 2024 at "Microbial Biotechnology"

DOI: 10.1111/1751-7915.14396

Abstract: Building models is essential for understanding the functions and dynamics of microbial communities. Metabolic models built on genome‐scale metabolic network reconstructions (GENREs) are especially relevant as a means to decipher the complex interactions occurring among… read more here.

Keywords: community scale; models microbiomes; metabolic modelling; scale models ... See more keywords

Academic and clinical perspectives of metagenome sequencing as a diagnostic tool for infectious disease: an interpretive phenomenological study

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recommendations! Published in 2025 at "BMC Infectious Diseases"

DOI: 10.1186/s12879-025-10820-x

Abstract: Effective infectious disease diagnostics (IDD) are vital for informing clinical decision-making regarding the treatment and patient management of disease and infections. In England, conventional clinical methods rely upon culture-dependent techniques, and there has been little… read more here.

Keywords: infectious disease; culture; clinical settings; metagenome sequencing ... See more keywords
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Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads

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recommendations! Published in 2020 at "Genome Biology"

DOI: 10.1186/s13059-020-1933-7

Abstract: Microbial populations exhibit functional changes in response to different ambient environments. Although whole metagenome sequencing promises enough raw data to study those changes, existing tools are limited in their ability to directly compare microbial metabolic… read more here.

Keywords: whole metagenome; carnelian uncovers; across diverse; study ... See more keywords

Next-Generation Metagenome Sequencing Shows Superior Diagnostic Performance in Acid-Fast Staining Sputum Smear-Negative Pulmonary Tuberculosis and Non-tuberculous Mycobacterial Pulmonary Disease

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recommendations! Published in 2022 at "Frontiers in Microbiology"

DOI: 10.3389/fmicb.2022.898195

Abstract: In this study, we explored the clinical value of next-generation metagenome sequencing (mNGS) using bronchoalveolar lavage fluid (BALF) samples from patients with acid-fast staining (AFS) sputum smear-negative pulmonary tuberculosis (PTB) and non-tuberculous mycobacterial pulmonary disease… read more here.

Keywords: spot; metagenome sequencing; sputum smear; generation metagenome ... See more keywords

Long-term follow-up of colorectal cancer screening attendees identifies differences in Phascolarctobacterium spp. using 16S rRNA and metagenome sequencing

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recommendations! Published in 2023 at "Frontiers in Oncology"

DOI: 10.3389/fonc.2023.1183039

Abstract: Background The microbiome has been implicated in the initiation and progression of colorectal cancer (CRC) in cross-sectional studies. However, there is a lack of studies using prospectively collected samples. Methods From the Norwegian Colorectal Cancer… read more here.

Keywords: long term; metagenome sequencing; 16s rrna; colorectal cancer ... See more keywords