KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac845
Abstract: Motivation The growing number of microbial reference genomes enables the improvement of metagenomic profiling accuracy but also imposes greater requirements on the indexing efficiency, database size, and runtime of taxonomic profilers. Additionally, most profilers focus… read more here.
Keywords: metagenomic profiling; kmcp; viral populations; profiling ... See more keywords
Metagenomic Profiling of Soil Microbes to Mine Salt Stress Tolerance Genes
Sign Up to like & getrecommendations! Published in 2018 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2018.00159
Abstract: Osmotolerance is one of the critical factors for successful survival and colonization of microbes in saline environments. Nonetheless, information about these osmotolerance mechanisms is still inadequate. Exploration of the saline soil microbiome for its community… read more here.
Keywords: profiling soil; metagenomic profiling; soil microbes; microbes mine ... See more keywords