Metatranscriptome analysis reveals environmental and diel regulation of a Heterosigma akashiwo (raphidophyceae) bloom
Sign Up to like & getrecommendations! Published in 2018 at "Environmental Microbiology"
DOI: 10.1111/1462-2920.14045
Abstract: Despite numerous laboratory studies on physiologies of harmful algal bloom (HAB) species, physiologies of these algae during a natural bloom are understudied. Here, we investigated a bloom of the raphidophyte Heterosigma akashiwo in the East… read more here.
Keywords: bloom; metatranscriptome analysis; heterosigma akashiwo; regulation ... See more keywords
SAMSA2: a standalone metatranscriptome analysis pipeline
Sign Up to like & getrecommendations! Published in 2018 at "BMC Bioinformatics"
DOI: 10.1186/s12859-018-2189-z
Abstract: BackgroundComplex microbial communities are an area of growing interest in biology. Metatranscriptomics allows researchers to quantify microbial gene expression in an environmental sample via high-throughput sequencing. Metatranscriptomic experiments are computationally intensive because the experiments generate… read more here.
Keywords: samsa2 standalone; pipeline; analysis; standalone metatranscriptome ... See more keywords
Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut
Sign Up to like & getrecommendations! Published in 2018 at "PLoS ONE"
DOI: 10.1371/journal.pone.0194066
Abstract: Undigestible food ingredients are converted by the microbiota into a large range of metabolites, predominated by short chain fatty acids (SCFA). These microbial metabolites are subsequently available for absorption by the host mucosa and can… read more here.
Keywords: protein; fermentation; analysis microbial; high protein ... See more keywords