Mining elements of siderophore chirality encoded in microbial genomes
Sign Up to like & getrecommendations! Published in 2022 at "FEBS Letters"
DOI: 10.1002/1873-3468.14539
Abstract: The vast majority of bacteria require iron to grow. A significant iron acquisition strategy is the production of siderophores, which are secondary microbial metabolites synthesized to sequester iron(III). Siderophore structures encompass a variety of forms,… read more here.
Keywords: iron; microbial genomes; mining elements; elements siderophore ... See more keywords
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Sign Up to like & getrecommendations! Published in 2018 at "Nature Communications"
DOI: 10.1038/s41467-018-03317-6
Abstract: The cow rumen is adapted for the breakdown of plant material into energy and nutrients, a task largely performed by enzymes encoded by the rumen microbiome. Here we present 913 draft bacterial and archaeal genomes… read more here.
Keywords: cow rumen; rumen microbiome; assembly 913; genomes metagenomic ... See more keywords
Corrigendum: Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids
Sign Up to like & getrecommendations! Published in 2017 at "Scientific Data"
DOI: 10.1038/sdata.2017.80
Abstract: This corrects the article DOI: 10.1038/sdata.2017.37. read more here.
Keywords: sequencing microbial; corrigendum metagenome; genomes juan; microbial genomes ... See more keywords
Large-Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic Diversity
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DOI: 10.1128/msystems.01045-20
Abstract: Microbiome studies on a select few mammalian species (e.g., humans, mice, and cattle) have revealed a great deal of novel genomic diversity in the gut microbiome. However, little is known of the microbial diversity in… read more here.
Keywords: genomic diversity; gene; metagenome; microbial genomes ... See more keywords
MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes
Sign Up to like & getrecommendations! Published in 2021 at "BMC Bioinformatics"
DOI: 10.1186/s12859-020-03940-5
Abstract: Background High-throughput sequencing has increased the number of available microbial genomes recovered from isolates, single cells, and metagenomes. Accordingly, fast and comprehensive functional gene annotation pipelines are needed to analyze and compare these genomes. Although… read more here.
Keywords: pipeline; functional annotation; annotation; microbial genomes ... See more keywords
Recovery of metagenome-assembled microbial genomes from a full-scale biogas plant of food waste by pacific biosciences high-fidelity sequencing
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Microbiology"
DOI: 10.3389/fmicb.2022.1095497
Abstract: Background Anaerobic digestion (AD) is important in treating of food waste, and thousands of metagenome-assembled genomes (MAGs) have been constructed for the microbiome in AD. However, due to the limitations of the short-read sequencing and… read more here.
Keywords: microbial genomes; food waste; high fidelity;