Microbiome analysis revealing microbial interactions and secondary bacterial infections in COVID‐19 patients comorbidly affected by Type 2 diabetes
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Medical Virology"
DOI: 10.1002/jmv.28234
Abstract: The mortality of coronavirus disease 2019 (COVID‐19) disease is very high among the elderly or individuals having comorbidities such as obesity, cardiovascular diseases, lung infections, hypertension, and/or diabetes. Our study characterizes the metagenomic features in… read more here.
Keywords: normal flora; type diabetes; microbiome analysis; microbial interactions ... See more keywords
Microbiome analysis in women with endometriosis: Does a microbiome exist in peritoneal fluid and ovarian cystic fluid?
Sign Up to like & getrecommendations! Published in 2022 at "Reproductive Medicine and Biology"
DOI: 10.1002/rmb2.12441
Abstract: To investigate the relationship between the microbiome of the female genital tract and endometriosis. read more here.
Keywords: women endometriosis; endometriosis microbiome; analysis women; microbiome analysis ... See more keywords
Microbiome Analysis Using 16S Amplicon Sequencing: From Samples to ASVs.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1103-6_7
Abstract: In this chapter, we will present an outline of a typical experimental and bioinformatic workflow for identification of bacterial amplicon sequence variants (ASVs) present in a set of samples. This chapter is written from a… read more here.
Keywords: analysis; microbiome analysis; using 16s; 16s amplicon ... See more keywords
Improving the standards for gut microbiome analysis of fecal samples: insights from the field biology of Japanese macaques on Yakushima Island
Sign Up to like & getrecommendations! Published in 2018 at "Primates"
DOI: 10.1007/s10329-018-0671-x
Abstract: Fecal DNA-based 16S ribosomal RNA (rRNA) gene sequencing using next-generation sequencers allows us to understand the dynamic gut microbiome adaptation of animals to their specific habitats. Conventional techniques of fecal microbiome analysis have been developed… read more here.
Keywords: japanese macaques; microbiome analysis; biology; gut microbiome ... See more keywords
Organism and Microbiome Analysis: Techniques and Implications for Chronic Rhinosinusitis.
Sign Up to like & getrecommendations! Published in 2017 at "Otolaryngologic clinics of North America"
DOI: 10.1016/j.otc.2017.01.004
Abstract: Modern advances in DNA sequencing have allowed for the development of culture-independent techniques with application to infectious and inflammatory conditions, such as rhinosinusitis. Although paradigm-changing discoveries have resulted from molecular microbiologic methods for a number… read more here.
Keywords: analysis techniques; rhinosinusitis; chronic rhinosinusitis; microbiome analysis ... See more keywords
MAPLE: A Microbiome Analysis Pipeline Enabling Optimal Peptide Search and Comparative Taxonomic and Functional Analysis.
Sign Up to like & getrecommendations! Published in 2021 at "Journal of proteome research"
DOI: 10.1021/acs.jproteome.1c00114
Abstract: Metaproteomics by mass spectrometry (MS) is a powerful approach to profile a large number of proteins expressed by all organisms in a highly complex biological or ecological sample, which is able to provide a direct… read more here.
Keywords: taxonomic functional; search; analysis; microbiome analysis ... See more keywords
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities
Sign Up to like & getrecommendations! Published in 2021 at "Scientific Reports"
DOI: 10.1038/s41598-021-89881-2
Abstract: Despite the advent of whole genome metagenomics, targeted approaches (such as 16S rRNA gene amplicon sequencing) continue to be valuable for determining the microbial composition of samples. Amplicon microbiome sequencing can be performed on clinical… read more here.
Keywords: analysis; study; microbiome analysis; 16s rrna ... See more keywords
The best practice for microbiome analysis using R.
Sign Up to like & getrecommendations! Published in 2023 at "Protein & cell"
DOI: 10.1093/procel/pwad024
Abstract: With the gradual maturity of sequencing technology, many microbiome studies have published, driving the emergence and advance of related analysis tools. R language is the widely used platform for microbiome data analysis for powerful functions.… read more here.
Keywords: practice microbiome; analysis; best practice; microbiome analysis ... See more keywords
Microbiome Analysis for Wastewater Surveillance during COVID-19
Sign Up to like & getrecommendations! Published in 2022 at "mBio"
DOI: 10.1128/mbio.00591-22
Abstract: Traditionally, testing for COVID-19 is done by detecting SARS-CoV-2 in samples collected from nasal swabs and/or saliva. However, SARS-CoV-2 can also be detected in feces of infected individuals. ABSTRACT Wastewater surveillance (WS), when coupled with… read more here.
Keywords: wastewater; community; covid; microbiome analysis ... See more keywords
Personal microbiome analysis improves student engagement and interest in Immunology, Molecular Biology, and Genomics undergraduate courses
Sign Up to like & getrecommendations! Published in 2018 at "PLoS ONE"
DOI: 10.1371/journal.pone.0193696
Abstract: A critical area of emphasis for science educators is the identification of effective means of teaching and engaging undergraduate students. Personal microbiome analysis is a means of identifying the microbial communities found on or in… read more here.
Keywords: biology; personal microbiome; immunology; microbiome analysis ... See more keywords
Reliability of species detection in 16S microbiome analysis: Comparison of five widely used pipelines and recommendations for a more standardized approach
Sign Up to like & getrecommendations! Published in 2023 at "PLOS ONE"
DOI: 10.1371/journal.pone.0280870
Abstract: The use of NGS-based testing of the bacterial microbiota is often impeded by inconsistent or non-reproducible results, especially when applying different analysis pipelines and reference databases. We investigated five frequently used software packages by submitting… read more here.
Keywords: species detection; detection 16s; analysis; microbiome analysis ... See more keywords