Primate microbiomes over time: Longitudinal answers to standing questions in microbiome research
Sign Up to like & getrecommendations! Published in 2019 at "American Journal of Primatology"
DOI: 10.1002/ajp.22970
Abstract: To date, most insights into the processes shaping vertebrate gut microbiomes have emerged from studies with cross‐sectional designs. While this approach has been valuable, emerging time series analyses on vertebrate gut microbiomes show that gut… read more here.
Keywords: microbiome research; primate microbiomes; time; microbiomes time ... See more keywords
A comprehensive evaluation of single-end sequencing data analyses for environmental microbiome research.
Sign Up to like & getrecommendations! Published in 2021 at "Archives of microbiology"
DOI: 10.1007/s00203-021-02597-9
Abstract: Illumina sequencing platforms have been widely used for amplicon-based environmental microbiome research. Analyses of amplicon data of environmental samples, generated from Illumina MiSeq platform illustrate the reverse (R2) reads in the PE datasets to have… read more here.
Keywords: sequencing data; microbiome research; environmental microbiome; single end ... See more keywords
Towards multi-label classification: Next step of machine learning for microbiome research
Sign Up to like & getrecommendations! Published in 2021 at "Computational and Structural Biotechnology Journal"
DOI: 10.1016/j.csbj.2021.04.054
Abstract: Machine learning (ML) has been widely used in microbiome research for biomarker selection and disease prediction. By training microbial profiles of samples from patients and healthy controls, ML classifiers constructs data models by community features… read more here.
Keywords: label classification; multi label; machine learning; microbiome research ... See more keywords
Diversity and bias in oral microbiome research: A commentary
Sign Up to like & getrecommendations! Published in 2021 at "EClinicalMedicine"
DOI: 10.1016/j.eclinm.2021.100923
Abstract: The oral cavity has the second largest and most diverse microbiota of the human body, harbouring over 700 microbial species [1]. Oral microbial communities are dominated by bacteria, but also contain archaea, viruses, and eukaryotes,… read more here.
Keywords: oral microbiome; research; microbiome research; microbiome studies ... See more keywords
From endosymbiosis to holobionts: Evaluating a conceptual legacy.
Sign Up to like & getrecommendations! Published in 2017 at "Journal of theoretical biology"
DOI: 10.1016/j.jtbi.2017.03.008
Abstract: In her influential 1967 paper, Lynn Margulis synthesized a range of data to support the idea of endosymbiosis. Building on the success of this work, she applied the same methodology to promote the role of… read more here.
Keywords: endosymbiosis; evaluating conceptual; microbiome research; endosymbiosis holobionts ... See more keywords
Priorities for the next 10 years of human microbiome research
Sign Up to like & getrecommendations! Published in 2019 at "Nature"
DOI: 10.1038/d41586-019-01654-0
Abstract: The dream of microbiome-based medicine requires a fresh approach — an ecological and evolutionary understanding of host-microbe interactions — argues Lita Proctor.The dream of microbiome-based medicine requires a fresh approach — an ecological and evolutionary… read more here.
Keywords: medicine; human microbiome; microbiome research; years human ... See more keywords
Responsible stewardship for communicating microbiome research to the press and public
Sign Up to like & getrecommendations! Published in 2019 at "Nature Medicine"
DOI: 10.1038/s41591-019-0470-y
Abstract: The human microbiome has captured the attention of both researchers and the lay press. Given its emerging role in health and disease, it is imperative that studies are communicated well so that in turn the… read more here.
Keywords: microbiome research; responsible stewardship; research press; press ... See more keywords
Reporting guidelines for human microbiome research: the STORMS checklist.
Sign Up to like & getrecommendations! Published in 2021 at "Nature medicine"
DOI: 10.1038/s41591-021-01552-x
Abstract: The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies… read more here.
Keywords: medicine; microbiome research; human microbiome; epidemiology ... See more keywords
What can microfluidics do for human microbiome research?
Sign Up to like & getrecommendations! Published in 2020 at "Biomicrofluidics"
DOI: 10.1063/5.0012185
Abstract: Dysregulation of the human microbiome has been linked to various disease states, which has galvanized the efforts to modulate human health through microbiomes. Currently, human microbiome research is going through several phases to identify the… read more here.
Keywords: research; human microbiome; microbiome research; microfluidics human ... See more keywords
Towards meaningful scales in ecosystem microbiome research.
Sign Up to like & getrecommendations! Published in 2020 at "Environmental microbiology"
DOI: 10.1111/1462-2920.15276
Abstract: Studies of microbial communities in natural ecosystems have been generally focused on mapping patterns of species and gene distributions. Although highly instrumental in expanding our understanding of microbial diversity and distribution patterns, such census studies… read more here.
Keywords: towards meaningful; microbiome research; meaningful scales; microbiology ... See more keywords
“Available upon request”: not good enough for microbiome data!
Sign Up to like & getrecommendations! Published in 2018 at "Microbiome"
DOI: 10.1186/s40168-017-0394-z
Abstract: Open data that is free and publicly available without restrictions is critical for progress in any scientific discipline and has been the cornerstone of sound and reproducible genomics research. Microbiome research is still a relatively… read more here.
Keywords: research; available upon; microbiome research; field ... See more keywords