A Robust Neural Network for Extracting Dynamics from Electrostatic Force Microscopy Data
Sign Up to like & getrecommendations! Published in 2022 at "Journal of chemical information and modeling"
DOI: 10.1021/acs.jcim.2c00738
Abstract: Advances in scanning probe microscopy (SPM) methods such as time-resolved electrostatic force microscopy (trEFM) now permit the mapping of fast local dynamic processes with high resolution in both space and time, but such methods can… read more here.
Keywords: neural network; network; microscopy data; force microscopy ... See more keywords
3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax
Sign Up to like & getrecommendations! Published in 2019 at "Nature Methods"
DOI: 10.1038/s41592-019-0359-1
Abstract: To the Editor — State-of-the-art 3D-rendering software for microscopy data (Imaris, Bitplane; Arivis 4D Viewer, Arivis AG; Volocity, PerkinElmer; FluoRender1) assembles animations based on key frames: the user stores different scene transformations in several key… read more here.
Keywords: key frames; microscopy; microscopy data; animation ... See more keywords
BactMAP: An R package for integrating, analyzing and visualizing bacterial microscopy data
Sign Up to like & getrecommendations! Published in 2019 at "Molecular Microbiology"
DOI: 10.1111/mmi.14417
Abstract: High‐throughput analyses of single‐cell microscopy data are a critical tool within the field of bacterial cell biology. Several programs have been developed to specifically segment bacterial cells from phase‐contrast images. Together with spot and object… read more here.
Keywords: bactmap package; microscopy data; cell; microscopy ... See more keywords
ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data
Sign Up to like & getrecommendations! Published in 2019 at "PLoS ONE"
DOI: 10.1371/journal.pone.0217524
Abstract: Single-molecule fluorescence microscopy studies of bacteria provide unique insights into the mechanisms of cellular processes and protein machineries in ways that are unrivalled by any other technique. With the cost of microscopes dropping and the… read more here.
Keywords: data analysis; microscopy; analysis; fluorescence microscopy ... See more keywords
3D fluorescence microscopy data synthesis for segmentation and benchmarking
Sign Up to like & getrecommendations! Published in 2021 at "PLoS ONE"
DOI: 10.1371/journal.pone.0260509
Abstract: Automated image processing approaches are indispensable for many biomedical experiments and help to cope with the increasing amount of microscopy image data in a fast and reproducible way. Especially state-of-the-art deep learning-based approaches most often… read more here.
Keywords: fluorescence microscopy; image; microscopy; microscopy data ... See more keywords