Singular optimal control by minimizer flows
Sign Up to like & getrecommendations! Published in 2018 at "European Journal of Control"
DOI: 10.1016/j.ejcon.2018.03.001
Abstract: Abstract This paper studies a computational method to deal with a singular optimal control problem by minimizer flows in a viscosity approximation to the Hamilton–Jacobi–Bellman equation. The boundary of the compact constraint set of control… read more here.
Keywords: singular optimal; control; minimizer; control minimizer ... See more keywords
Differentiable Learning of Sequence-Specific Minimizer Schemes with DeepMinimizer
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Computational Biology"
DOI: 10.1089/cmb.2022.0275
Abstract: Minimizers are widely used to sample representative k-mers from biological sequences in many applications, such as read mapping and taxonomy prediction. In most scenarios, having the minimizer scheme select as few k-mer positions as possible… read more here.
Keywords: density; differentiable learning; minimizer; minimizer schemes ... See more keywords
Weighted minimizer sampling improves long read mapping.
Sign Up to like & getrecommendations! Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa435
Abstract: MOTIVATION In this era of exponential data growth, minimizer sampling has become a standard algorithmic technique for rapid genome sequence comparison. This technique yields a sub-linear representation of sequences, enabling their comparison in reduced space… read more here.
Keywords: weighted minimizer; winnowmap; long read; sampling improves ... See more keywords