Differentiable Learning of Sequence-Specific Minimizer Schemes with DeepMinimizer
Sign Up to like & getrecommendations! Published in 2022 at "Journal of Computational Biology"
DOI: 10.1089/cmb.2022.0275
Abstract: Minimizers are widely used to sample representative k-mers from biological sequences in many applications, such as read mapping and taxonomy prediction. In most scenarios, having the minimizer scheme select as few k-mer positions as possible… read more here.
Keywords: density; differentiable learning; minimizer; minimizer schemes ... See more keywords