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   Articles with "mlva" as a keyword



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Multiple-locus variable-number tandem repeat analysis using multiplex polymerase chain reaction and next-generation sequencing - A novel high-throughput method for subtyping Listeria strains

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recommendations! Published in 2018 at "Food Control"

DOI: 10.1016/j.foodcont.2018.06.006

Abstract: Abstract Listeria monocytogenes is significantly associated with listeriosis infection. Several species of Listeria other than L. monocytogenes directly affect the food industry. In the present study we developed a novel subtyping method for tracking the… read more here.

Keywords: coupled ngs; tandem repeat; variable number; mlva ... See more keywords
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Genotyping Mycoplasma hyorhinis by multi-locus sequence typing and multiple-locus variable-number tandem-repeat analysis.

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recommendations! Published in 2020 at "Veterinary microbiology"

DOI: 10.1016/j.vetmic.2020.108836

Abstract: Mycoplasma hyorhinis is a swine pathogen bacterium, which causes significant economic losses. The infection spreads through direct contact between the animals. Powerful genotyping methods like PCR based multi-locus sequence typing (MLST) and multiple-locus variable-number tandem-repeat… read more here.

Keywords: mlva; tandem repeat; hyorhinis; locus ... See more keywords
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Intergenic region polymorphism analysis: a novel genotyping method for Klebsiella pneumoniae.

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recommendations! Published in 2023 at "Journal of applied microbiology"

DOI: 10.1093/jambio/lxad030

Abstract: AIMS The ability to distinguish between Klebsiella pneumoniae strains is critical for outbreak investigations. A new typing method, intergenic region polymorphism analysis (IRPA), was developed, validated, and the discriminatory power was determined by comparison with… read more here.

Keywords: klebsiella pneumoniae; mlva; analysis; irpa ... See more keywords
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A novel multilocus variable-number tandem repeat analysis for Bordetella parapertussis.

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recommendations! Published in 2019 at "Journal of medical microbiology"

DOI: 10.1099/jmm.0.001095

Abstract: Purpose. Human-adapted Bordetella parapertussis is one of the causative agents of whooping cough; however, there are currently no genotyping systems with high discriminatory power for this bacterial pathogen. We therefore aimed to develop a multilocus… read more here.

Keywords: mlva; number tandem; parapertussis; variable number ... See more keywords
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Modification of a multiple‐locus variable number tandem repeat analysis (MLVA) for typing isolates of Erwinia amylovora

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recommendations! Published in 2017 at "Plant Pathology"

DOI: 10.1111/ppa.12660

Abstract: &NA; Erwinia amylovora, the causal agent of fire blight that affects economically important rosaceous plants, is reported among the most important plant pathogenic bacteria. The low genetic diversity within E. amylovora and the lack of… read more here.

Keywords: mlva; number tandem; variable number; tandem repeat ... See more keywords
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Seroprevalence trend of human brucellosis and MLVA genotyping characteristics of Brucella melitensis in Shaanxi Province, China, during 2008-2020.

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recommendations! Published in 2021 at "Transboundary and emerging diseases"

DOI: 10.1111/tbed.14320

Abstract: In this study, a total of 179,907 blood samples from populations with suspected Brucella spp. infections were collected between 2008 and 2020 and analyzed by the Rose-Bengal plate test (RBPT) and serum agglutination test (SAT).… read more here.

Keywords: human brucellosis; 2008 2020; province; mlva ... See more keywords
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Tracking the distribution, genetic diversity, and lineage of Brucella melitensis recovered from humans and animals in Egypt based on core-genome SNP analysis and in silico MLVA-16.

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recommendations! Published in 2022 at "Transboundary and emerging diseases"

DOI: 10.1111/tbed.14768

Abstract: Brucellosis is one of the most common neglected zoonotic diseases globally, with a public health significance and a high economic loss in the livestock industry caused by the bacteria of the genus Brucella. In this… read more here.

Keywords: silico mlva; brucella; core genome; mlva ... See more keywords
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Effective Surveillance Using Multilocus Variable-Number Tandem-Repeat Analysis and Whole-Genome Sequencing for Enterohemorrhagic Escherichia coli O157

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recommendations! Published in 2019 at "Applied and Environmental Microbiology"

DOI: 10.1128/aem.00728-19

Abstract: Intensive surveillance for enterohemorrhagic Escherichia coli (EHEC) serogroup O157 is important to detect outbreaks and to prevent the spread of the bacterium. Recent advances in sequencing technology made molecular surveillance using whole-genome sequence (WGS) realistic.… read more here.

Keywords: genome; surveillance; mlva; enterohemorrhagic escherichia ... See more keywords
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Comparing Multiple Locus Variable-Number Tandem Repeat Analyses with Whole-Genome Sequencing as Typing Method for Salmonella Enteritidis Surveillance in The Netherlands, January 2019 to March 2020

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recommendations! Published in 2022 at "Microbiology Spectrum"

DOI: 10.1128/spectrum.01375-22

Abstract: Salmonella is the most frequently reported agent causing foodborne outbreaks and the second most common zoonoses in the European Union. The incidence of the most dominant serotype Enteritidis has increased in recent years. ABSTRACT In… read more here.

Keywords: salmonella; mlva; enteritidis isolates; wgs ... See more keywords
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A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis

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recommendations! Published in 2023 at "PLOS ONE"

DOI: 10.1371/journal.pone.0285491

Abstract: Cassava Bacterial Blight (CBB) is a destructive disease widely distributed in the different areas where this crop is grown. Populations studies have been performed at local and national scales revealing a geographical genetic structure with… read more here.

Keywords: xanthomonas phaseoli; mlva; scheme; global epidemiology ... See more keywords
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Phylogeography of Human and Animal Coxiella burnetii Strains: Genetic Fingerprinting of Q Fever in Belgium

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recommendations! Published in 2020 at "Frontiers in Cellular and Infection Microbiology"

DOI: 10.3389/fcimb.2020.625576

Abstract: Q fever is a zoonotic disease caused by the bacteria Coxiella burnetii. Domestic ruminants are the primary source for human infection, and the identification of likely contamination routes from the reservoir animals the critical point… read more here.

Keywords: snp1 mlva; belgium; coxiella burnetii; mlva ... See more keywords