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Published in 2017 at "Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery"
DOI: 10.1002/widm.1199
Abstract: Last decades witness a huge growth in medical applications, genetic analysis, and in performance of manufacturing technologies and automatised production systems. A challenging task is to identify and diagnose the behavior of such systems, which…
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Keywords:
discovery;
series motif;
time series;
motif discovery ... See more keywords
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Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-1307-8_3
Abstract: RNA primary and secondary motif discovery is an important step in the annotation and characterization of unknown interaction dynamics between RNAs and RNA-Binding Proteins, and several methods have been developed to meet the need of…
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Keywords:
discovery clip;
motif discovery;
discovery;
biology ... See more keywords
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Published in 2019 at "Neural Computing and Applications"
DOI: 10.1007/s00521-019-04611-0
Abstract: The DNA motif discovery (MD) problem is the main challenge of genome biology, and its importance is directly proportional to increasing sequencing technologies. MD plays a vital role in the identification of transcription factor binding…
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Keywords:
henry gas;
motif discovery;
modified henry;
discovery ... See more keywords
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Published in 2019 at "Methods"
DOI: 10.1016/j.ymeth.2019.07.008
Abstract: Networks exhibit rich and diverse higher-order organizational structures. Network motifs, which are recurring significant patterns of inter-connections, are recognized as fundamental units to study the higher-order organizations of networks. However, the principle of selecting representative…
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Keywords:
order;
network motif;
network;
motif discovery ... See more keywords
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Published in 2020 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btaa054
Abstract: SUMMARY High-Throughput Sequencing can enhance the analysis of aptamer libraries generated by the Systematic Evolution of Ligands by EXponential enrichment (HTS-SELEX). Robust analysis of the resulting sequenced rounds is best implemented by determining a ranked…
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Keywords:
hts selex;
aptcompare;
aptcompare optimized;
optimized novo ... See more keywords
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Published in 2018 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btx798
Abstract: Motivation Genomic networks represent a complex map of molecular interactions which are descriptive of the biological processes occurring in living cells. Identifying the small over-represented circuitry patterns in these networks helps generate hypotheses about the…
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Keywords:
indecut;
network motif;
network;
motif discovery ... See more keywords
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Published in 2021 at "Plant physiology"
DOI: 10.1093/plphys/kiaa091
Abstract: The identification of functional elements encoded in plant genomes is necessary to understand gene regulation. Although much attention has been paid to model species like Arabidopsis (Arabidopsis thaliana), little is known about regulatory motifs in…
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Keywords:
promoter boundaries;
motif discovery;
example;
discovery ... See more keywords
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Published in 2017 at "IEEE/ACM Transactions on Computational Biology and Bioinformatics"
DOI: 10.1109/tcbb.2015.2511750
Abstract: Motif recognition is a challenging problem in bioinformatics due to the diversity of protein motifs. Many existing algorithms identify motifs of a given length, thus being either not applicable or not efficient when searching simultaneously…
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Keywords:
motif;
approach motif;
motif discovery;
approach ... See more keywords
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Published in 2021 at "IEEE Transactions on Knowledge and Data Engineering"
DOI: 10.1109/tkde.2019.2950623
Abstract: The discovery of time series motifs has emerged as one of the most useful primitives in time series data mining. Researchers have shown its utility for exploratory data mining, summarization, visualization, segmentation, classification, clustering, and…
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Keywords:
missing data;
motif discovery;
discovery;
time series ... See more keywords
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Published in 2018 at "Journal of bioinformatics and computational biology"
DOI: 10.1142/s0219720017400121
Abstract: The development of chromatin immunoprecipitation sequencing (ChIP-seq) technology has revolutionized the genetic analysis of the basic mechanisms underlying transcription regulation and led to accumulation of information about a huge amount of DNA sequences. There are…
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Keywords:
dna;
motif discovery;
argo cuda;
discovery ... See more keywords
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Published in 2019 at "BMC Bioinformatics"
DOI: 10.1186/s12859-019-2686-8
Abstract: BackgroundBacterial surfaces are complex systems, constructed from membranes, peptidoglycan and, importantly, proteins. The proteins play crucial roles as critical regulators of how the bacterium interacts with and survive in its environment. A full catalog of…
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Keywords:
motif;
motif discovery;
discovery construct;
plasma proteins ... See more keywords