Bioinformatic Methods for the Analysis of High-Throughput RNA Sequencing in Arbuscular Mycorrhizal Fungi.
Sign Up to like & getrecommendations! Published in 2020 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-0603-2_11
Abstract: RNA-seq is a powerful method for transcriptome profiling that allows the detection of total RNA present in a single cell, tissues, or organs. mRNA-seq is focused on protein-coding RNAs, and results in large datasets of… read more here.
Keywords: bioinformatic methods; mycorrhizal fungi; mrna seq; arbuscular mycorrhizal ... See more keywords
Single-Cell mRNA-Seq Using the Fluidigm C1 System and Integrated Fluidics Circuits.
Sign Up to like & getrecommendations! Published in 2018 at "Methods in molecular biology"
DOI: 10.1007/978-1-4939-7834-2_10
Abstract: Single-cell mRNA-seq is a valuable tool to dissect expression profiles and to understand the regulatory network of genes. Microfluidics is well suited for single-cell analysis owing both to the small volume of the reaction chambers… read more here.
Keywords: single cell; cell; mrna seq; cell mrna ... See more keywords
Clustering of mRNA‐Seq data based on alternative splicing patterns
Sign Up to like & getrecommendations! Published in 2017 at "Biostatistics"
DOI: 10.1093/biostatistics/kxw044
Abstract: &NA; Sequencing of messenger RNA (mRNA) can provide estimates of the levels of individual isoforms within the cell. It remains to adapt many standard statistical methods commonly used for analyzing gene expression levels to take… read more here.
Keywords: clustering mrna; mrna seq; seq data; data based ... See more keywords
Multi-Cohort Transcriptomic Subtyping of B-Cell Acute Lymphoblastic Leukemia
Sign Up to like & getrecommendations! Published in 2022 at "International Journal of Molecular Sciences"
DOI: 10.3390/ijms23094574
Abstract: Acute lymphoblastic leukemia (ALL) is the most common childhood cancer and comprises multiple genetically distinguishable subtypes. To detect subtypes, current pipelines include fusion calling, polymorphisms, candidate gene copy numbers and cytogenetics but these approaches have… read more here.
Keywords: mrna seq; multi cohort; lymphoblastic leukemia; cohort transcriptomic ... See more keywords