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   Articles with "multi locus" as a keyword



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Combination of multi-locus genome-wide association study and QTL mapping reveals genetic basis of tassel architecture in maize

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recommendations! Published in 2019 at "Molecular Genetics and Genomics"

DOI: 10.1007/s00438-019-01586-4

Abstract: Maize tassel architecture is a complex quantitative trait that is significantly correlated with biomass yield and grain yield. The present study evaluated the major trait of maize tassel architecture, namely, tassel branch number (TBN), in… read more here.

Keywords: study; tassel architecture; association; multi locus ... See more keywords
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Local outbreak of Clostridioides difficile PCR-Ribotype 018 investigated by multi locus variable number tandem repeat analysis, whole genome multi locus sequence typing and core genome single nucleotide polymorphism typing.

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recommendations! Published in 2019 at "Anaerobe"

DOI: 10.1016/j.anaerobe.2019.102087

Abstract: The prevalence of Clostridioides difficile PCR-ribotype (RT) 018 is low in Europe but variations are observed across countries. We report here the first RT 018-related outbreak in France that took place in 4 geriatric units… read more here.

Keywords: multi; analysis; multi locus; cgsnp ... See more keywords
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A deep hybrid model to detect multi-locus interacting SNPs in the presence of noise

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recommendations! Published in 2018 at "International journal of medical informatics"

DOI: 10.1016/j.ijmedinf.2018.09.003

Abstract: Identifying genetic variants associated with complex diseases is a central focus of genome-wide association studies. These studies extensively adopt univariate analysis by ignoring interaction effects. It is widely accepted that the etiology of most complex… read more here.

Keywords: model; presence noise; multi locus; presence ... See more keywords
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Multi-locus sequence typing analysis of Mycoplasma synoviae isolates reveals unique sequence types in China.

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recommendations! Published in 2021 at "Veterinary microbiology"

DOI: 10.1016/j.vetmic.2021.109101

Abstract: Mycoplasma synoviae is a common pathogen affecting poultry and has important economic significance. Infectious synovitis is the most common clinical effect. Since 2010, the incidence of M. synoviae infection in China has rapidly risen, causing… read more here.

Keywords: analysis; multi locus; synoviae; locus sequence ... See more keywords
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Multi-locus phylogeny and species delimitation of Australo-Papuan blacksnakes (Pseudechis Wagler, 1830: Elapidae: Serpentes).

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recommendations! Published in 2017 at "Molecular phylogenetics and evolution"

DOI: 10.1016/j.ympev.2016.09.005

Abstract: Genetic analyses of Australasian organisms have resulted in the identification of extensive cryptic diversity across the continent. The venomous elapid snakes are among the best-studied organismal groups in this region, but many knowledge gaps persist:… read more here.

Keywords: papuan blacksnakes; species delimitation; multi locus; blacksnakes pseudechis ... See more keywords

Multi-locus phylogenetics of the Midichloria endosymbionts reveals variable specificity of association with ticks

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recommendations! Published in 2018 at "Parasitology"

DOI: 10.1017/s0031182018000793

Abstract: Abstract Candidatus Midichloria mitochondrii is a maternally inherited bacterium of ticks with a unique intra-mitochondrial lifestyle. Here, we investigate on the evolutionary history of these associations and the degree of Midichloria–tick specificity. While previous surveys… read more here.

Keywords: midichloria endosymbionts; phylogenetics midichloria; locus phylogenetics; multi locus ... See more keywords
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Multi Locus View: an extensible web-based tool for the analysis of genomic data.

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recommendations! Published in 2021 at "Communications Biology"

DOI: 10.1038/s42003-021-02097-y

Abstract: Tracking and understanding data quality, analysis and reproducibility are critical concerns in the biological sciences. This is especially true in genomics where next generation sequencing (NGS) based technologies such as ChIP-seq, RNA-seq and ATAC-seq are… read more here.

Keywords: web based; analysis; multi locus; based tool ... See more keywords
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Methodological implementation of mixed linear models in multi-locus genome-wide association studies

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recommendations! Published in 2018 at "Briefings in Bioinformatics"

DOI: 10.1093/bib/bbw145

Abstract: &NA; The mixed linear model has been widely used in genome‐wide association studies (GWAS), but its application to multi‐locus GWAS analysis has not been explored and assessed. Here, we implemented a fast multi‐locus random‐SNP‐effect EMMA… read more here.

Keywords: genome wide; model; multi locus; mixed linear ... See more keywords
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Diversity of Cronobacter genus isolated between 1970-2019 on the American continent and genotyped using multi-locus sequence typing.

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recommendations! Published in 2021 at "FEMS microbiology letters"

DOI: 10.1093/femsle/fnab027

Abstract: This study aimed to evaluate the Cronobacter spp. strains isolated on the American continent and characterized using multi-locus sequence typing (MLST) available in the PubMLST database and current literature. From 465 Cronobacter spp. strains, the… read more here.

Keywords: using multi; american continent; multi locus; locus ... See more keywords
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Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples

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recommendations! Published in 2017 at "GigaScience"

DOI: 10.1093/gigascience/gix080

Abstract: Abstract DNA metabarcoding provides great potential for species identification in complex samples such as food supplements and traditional medicines. Such a method would aid Convention on International Trade in Endangered Species of Wild Fauna and… read more here.

Keywords: locus dna; dna; dna metabarcoding; multi locus ... See more keywords
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MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples

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recommendations! Published in 2017 at "Nucleic Acids Research"

DOI: 10.1093/nar/gkw837

Abstract: Metagenomic characterization of microbial communities has the potential to become a tool to identify pathogens in human samples. However, software tools able to extract strain-level typing information from metagenomic data are needed. Low-throughput molecular typing… read more here.

Keywords: level bacterial; bacterial typing; locus strain; multi locus ... See more keywords