Multilocus Sequence Typing (MLST) and Whole Genome Sequencing (WGS) of Listeria monocytogenes and Listeria innocua.
Sign Up to like & getrecommendations! Published in 2021 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-0982-8_7
Abstract: Nucleotide sequence-based methods focusing on the single-nucleotide polymorphisms (SNPs) of Listeria monocytogenes and L. innocua housekeeping genes (multilocus sequence typing) and in the core genome (core genome MLST) facilitate the rapid and interlaboratory comparison in… read more here.
Keywords: listeria; genome; sequence; sequence typing ... See more keywords
Multilocus sequence analysis supports a low genetic diversity among ‘Candidatus Phytoplasma australasia’ related strains infecting vegetable crops and periwinkle in Egypt
Sign Up to like & getrecommendations! Published in 2017 at "European Journal of Plant Pathology"
DOI: 10.1007/s10658-017-1311-9
Abstract: Abstract‘Candidatus Phytoplasma australasia’ causes important damages to the Egyptian vegetable crop production. A prerequisite for controlling the different diseases it causes to eggplant, tomato and squash, is to trace its propagation pathways. To allow the… read more here.
Keywords: phytoplasma australasia; diversity; candidatus phytoplasma; sequence analysis ... See more keywords
Culture-independent multilocus sequence typing of Pseudomonas aeruginosa for cross-infection screening.
Sign Up to like & getrecommendations! Published in 2021 at "Diagnostic microbiology and infectious disease"
DOI: 10.1016/j.diagmicrobio.2021.115315
Abstract: The genotyping of pathogens within cystic fibrosis cohorts is an important process, enabling the detection of transmissible and clinically-important strains. Traditionally this has been via culture-dependent processes. However, culture-independent investigation of respiratory samples is becoming… read more here.
Keywords: pseudomonas aeruginosa; culture independent; culture; sequence typing ... See more keywords
Non-typhoidal Salmonella contamination in egg shells and contents from retail in Western Australia: Serovar diversity, multilocus sequence types, and phenotypic and genomic characterizations of antimicrobial resistance.
Sign Up to like & getrecommendations! Published in 2019 at "International journal of food microbiology"
DOI: 10.1016/j.ijfoodmicro.2019.108305
Abstract: In recent years, the number of human salmonellosis cases in Western Australia (WA) has increased more dramatically than in any other Australian state. In 2017, the number of cases in WA was more than double… read more here.
Keywords: egg; antimicrobial resistance; salmonella; multilocus sequence ... See more keywords
Genotyping Mycoplasma gallisepticum by multilocus sequence typing.
Sign Up to like & getrecommendations! Published in 2019 at "Veterinary microbiology"
DOI: 10.1016/j.vetmic.2019.03.016
Abstract: Mycoplasma gallisepticum causes chronic respiratory disease and reproductive disorders in many bird species, resulting in considerable economic losses to the poultry industry. Maintenance of M. gallisepticum-free flocks is the most adequate method to control infection.… read more here.
Keywords: mycoplasma gallisepticum; sequence typing; gallisepticum; multilocus sequence ... See more keywords
Multilocus sequence typing of Candida albicans isolates from the oral cavities of patients undergoing haemodialysis
Sign Up to like & getrecommendations! Published in 2018 at "Scientific Reports"
DOI: 10.1038/s41598-018-34565-7
Abstract: This study evaluates the prevalence, diversity, and genetic profiles of Candida albicans isolates recovered from the oral cavities of haemodialysis patients. Oral swab samples were obtained from haemodialysis patients (n = 126) and healthy control subjects (n = 233)… read more here.
Keywords: haemodialysis; albicans isolates; oral cavities; candida albicans ... See more keywords
A critical re-evaluation of multilocus sequence typing (MLST) efforts in Wolbachia
Sign Up to like & getrecommendations! Published in 2018 at "FEMS Microbiology Ecology"
DOI: 10.1093/femsec/fix163
Abstract: Wolbachia (Alphaproteobacteria, Rickettsiales) is the most common, and arguably one of the most important inherited symbionts. Molecular differentiation of Wolbachia strains is routinely performed with a set of five multilocus sequence typing (MLST) markers. However,… read more here.
Keywords: typing mlst; wolbachia; critical evaluation; sequence typing ... See more keywords
Bayesian Inference of Species Networks from Multilocus Sequence Data
Sign Up to like & getrecommendations! Published in 2018 at "Molecular Biology and Evolution"
DOI: 10.1093/molbev/msx307
Abstract: Abstract Reticulate species evolution, such as hybridization or introgression, is relatively common in nature. In the presence of reticulation, species relationships can be captured by a rooted phylogenetic network, and orthologous gene evolution can be… read more here.
Keywords: bayesian inference; network; sequence data; hybridization ... See more keywords
Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA.
Sign Up to like & getrecommendations! Published in 2023 at "Microbial genomics"
DOI: 10.1099/mgen.0.001012
Abstract: Campylobacter is a leading causing of bacterial foodborne and zoonotic illnesses in the USA. Pulsed-field gene electrophoresis (PFGE) and 7-gene multilocus sequence typing (MLST) have been historically used to differentiate sporadic from outbreak Campylobacter isolates.… read more here.
Keywords: campylobacter; correlation; multilocus sequence; whole genome ... See more keywords
Multilocus sequence typing (MLST) analysis of California Flavobacterium psychrophilum reveals novel genotypes and predominance of CC‐ST10 in California salmonid hatcheries
Sign Up to like & getrecommendations! Published in 2020 at "Aquaculture Research"
DOI: 10.1111/are.14578
Abstract: The Gram‐negative bacterium, Flavobacterium psychrophilum, is endemic to California, USA, where it is an important pathogen in salmonid aquaculture, especially in rainbow trout (Oncorhynchus mykiss). Disease outbreaks caused by F. psychrophilum in rainbow trout fingerlings… read more here.
Keywords: psychrophilum; salmonid hatcheries; california; flavobacterium psychrophilum ... See more keywords
Multilocus sequence analysis revealed a high genotypic diversity of Aeromonas hydrophila infecting fish in Uganda.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of fish diseases"
DOI: 10.1111/jfd.12873
Abstract: A multilocus sequence analysis (MLSA) was carried out to delineate Aeromonas hydrophila from fish in Uganda. Five housekeeping genes including recA, gyrB, metG, gltA and pps; and the 16S rRNA gene were amplified and sequenced… read more here.
Keywords: sequence analysis; fish uganda; gene; aeromonas hydrophila ... See more keywords