Processing and Analyzing Multiple Genomes Alignments with MafFilter.
Sign Up to like & getrecommendations! Published in 2020 at "Methods in molecular biology"
DOI: 10.1007/978-1-0716-0199-0_2
Abstract: As the number of available genome sequences from both closely related species and individuals within species increased, theoretical and methodological convergences between the fields of phylogenomics and population genomics emerged. Population genomics typically focuses on… read more here.
Keywords: analyzing multiple; processing analyzing; multiple genomes; genome alignments ... See more keywords
NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes
Sign Up to like & getrecommendations! Published in 2023 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btad121
Abstract: Abstract Summary Large-scale comparative genomic studies have provided important insights into species evolution and diversity, but also lead to a great challenge to visualize. Quick catching or presenting key information hidden in the vast amount… read more here.
Keywords: easy use; tool; visualization; multiple genomes ... See more keywords
GENESPACE tracks regions of interest and gene copy number variation across multiple genomes
Sign Up to like & getrecommendations! Published in 2022 at "eLife"
DOI: 10.7554/elife.78526
Abstract: The development of multiple chromosome-scale reference genome sequences in many taxonomic groups has yielded a high-resolution view of the patterns and processes of molecular evolution. Nonetheless, leveraging information across multiple genomes remains a significant challenge… read more here.
Keywords: multiple genomes; variation; across multiple; copy number ... See more keywords