Long‐read genotyping with SLANG (Simple Long‐read loci Assembly of Nanopore data for Genotyping)
Sign Up to like & getrecommendations! Published in 2022 at "Applications in Plant Sciences"
DOI: 10.1002/aps3.11484
Abstract: Abstract Premise Most phylogenomic library preparation methods and bioinformatic analysis tools in restriction site–associated DNA sequencing (RADseq)/genotyping‐by‐sequencing (GBS) studies are designed for use with Illumina data. The lack of alternative bioinformatic pipelines hinders the exploration… read more here.
Keywords: simple long; nanopore data; loci assembly; assembly nanopore ... See more keywords
Ongoing human chromosome end extension revealed by analysis of BioNano and nanopore data
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DOI: 10.1038/s41598-018-34774-0
Abstract: The majority of human chromosome ends remain incompletely assembled due to their highly repetitive structure. In this study, we use BioNano data to anchor and extend chromosome ends from two European trios as well as… read more here.
Keywords: bionano; human chromosome; nanopore data; extension ... See more keywords
Characterization of MinION nanopore data for resequencing analyses
Sign Up to like & getrecommendations! Published in 2017 at "Briefings in Bioinformatics"
DOI: 10.1093/bib/bbw077
Abstract: The Oxford Nanopore Technologies MinION is a new device, based on nanopore sequencing that is able to generate reads of tens of kilobases in length with faster sequencing time with respect to other platforms. To… read more here.
Keywords: characterization minion; minion nanopore; minion; nanopore data ... See more keywords