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   Articles with "nanopore sequencing" as a keyword



Sporadic Breast Angiosarcoma With MYC Amplification on Extrachromosomal Circular DNA Detected Using Nanopore Sequencing in an Adolescent Female

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recommendations! Published in 2024 at "Genes"

DOI: 10.1002/gcc.70004

Abstract: Angiosarcoma (AS) is a malignant vascular neoplasm comprising neoplastic endothelial cells accounting for 1%–4% of soft tissue sarcomas. While lymphedema‐associated and post‐irradiation ASs are almost always driven by a high‐level amplification of MYC (8q24), sporadic… read more here.

Keywords: myc amplification; breast; amplification; nanopore sequencing ... See more keywords

Assessment of two-pool multiplex long-amplicon nanopore sequencing of SARS-CoV-2.

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recommendations! Published in 2021 at "Journal of medical virology"

DOI: 10.1002/jmv.27336

Abstract: Genomic surveillance of SARS-CoV-2 plays an important role in COVID-19 pandemic control and elimination efforts, especially by elucidating its global transmission network and illustrating its viral evolution. The deployment of multiplex PCR assays that target… read more here.

Keywords: depth; long amplicon; nanopore sequencing; sars cov ... See more keywords

Identification of Rotavirus Genotypes in Children under Five Years in the United Arab Emirates Using Nanopore Sequencing Technology

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recommendations! Published in 2024 at "Journal of Medical Virology"

DOI: 10.1002/jmv.70056

Abstract: Group A rotaviruses (RVA) remain a principal cause of childhood diarrhea in the UAE, despite universal vaccine use. Monitoring genetic diversity is important for identifying prevalent genotypes and escape mutants. Although real‐time polymerase chain reaction… read more here.

Keywords: identification rotavirus; pcr; genotypes children; rotavirus genotypes ... See more keywords

Targeted nanopore sequencing enables complete characterisation of structural deletions initially identified using exon-based short-read sequencing strategies.

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recommendations! Published in 2023 at "Molecular genetics & genomic medicine"

DOI: 10.1002/mgg3.2164

Abstract: BACKGROUND The widespread adoption of exome sequencing has greatly increased the rate of genetic diagnosis for inherited conditions. However, the detection and validation of large deletions remains challenging. While numerous bioinformatics approaches have been developed… read more here.

Keywords: short read; characterisation; targeted nanopore; read sequencing ... See more keywords
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nanoNIPT: Short‐fragment nanopore sequencing of cell‐free DNA for non‐invasive prenatal testing of fetal aneuploidies and sex chromosome aberrations

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recommendations! Published in 2023 at "Prenatal Diagnosis"

DOI: 10.1002/pd.6331

Abstract: N/A This article is protected by copyright. All rights reserved. read more here.

Keywords: sequencing cell; cell free; fragment nanopore; nanonipt short ... See more keywords

Same-day genomic and epigenomic diagnosis of brain tumors using real-time nanopore sequencing

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recommendations! Published in 2017 at "Acta Neuropathologica"

DOI: 10.1007/s00401-017-1743-5

Abstract: Molecular classification of cancer has entered clinical routine to inform diagnosis, prognosis, and treatment decisions. At the same time, new tumor entities have been identified that cannot be defined histologically. For central nervous system tumors,… read more here.

Keywords: diagnosis; genomic epigenomic; time; nanopore sequencing ... See more keywords

Forensic nanopore sequencing of STRs and SNPs using Verogen’s ForenSeq DNA Signature Prep Kit and MinION

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recommendations! Published in 2021 at "International Journal of Legal Medicine"

DOI: 10.1007/s00414-021-02604-0

Abstract: The MinION nanopore sequencing device (Oxford Nanopore Technologies, Oxford, UK) is the smallest commercially available sequencer and can be used outside of conventional laboratories. The use of the MinION for forensic applications, however, is hindered… read more here.

Keywords: using verogen; forenseq dna; strs; minion ... See more keywords

Nanopore sequencing reveals a diversity of microorganisms in ticks from Ethiopia

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recommendations! Published in 2025 at "Parasitology Research"

DOI: 10.1007/s00436-025-08520-1

Abstract: Ethiopia is home to a diverse group of ixodid ticks that are known to transmit disease to both animals and humans. Recent advances in metagenome sequencing show there is more microorganism diversity found in ticks… read more here.

Keywords: reveals diversity; sequencing reveals; microorganisms ticks; nanopore sequencing ... See more keywords
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Nanocarbons for DNA sequencing: A review

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recommendations! Published in 2017 at "Carbon"

DOI: 10.1016/j.carbon.2017.01.012

Abstract: DNA sequencing using nanopores, so-named nanopore sequencing, is one of the most promising and revolutionary DNA sequencing technologies to provide the order and the type of nucleobases in a DNA molecule. In compare to those… read more here.

Keywords: carbon; dna sequencing; nanocarbons dna; nanopore sequencing ... See more keywords
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Single Molecule Ratcheting Motion of Peptides in a Mycobacterium smegmatis Porin A (MspA) Nanopore.

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recommendations! Published in 2021 at "Nano letters"

DOI: 10.1021/acs.nanolett.1c02371

Abstract: Diverse functions of proteins, including synthesis, catalysis, and signaling, result from their highly variable amino acid sequences. The technology allowing for direct analysis of protein sequences, however, is still unsatisfactory. Recent developments of nanopore sequencing… read more here.

Keywords: molecule ratcheting; motion; single molecule; motion peptides ... See more keywords

Discrimination between Different DNA Lesions by Monitoring Single-Molecule Polymerase Stalling Kinetics during Nanopore Sequencing.

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recommendations! Published in 2022 at "Nano letters"

DOI: 10.1021/acs.nanolett.2c01833

Abstract: O6-Carboxymethylguanosine (O6-CMG), O6-methylguanosine (O6-MeG), and abasic site (AP site) are DNA lesions induced by alkylating agents. Identification of these lesions in DNA may aid in understanding their relevance to carcinogenesis and may be used for… read more here.

Keywords: stalling kinetics; dna; dna lesions; different dna ... See more keywords