Enhancing gardens as habitats for plant-associated invertebrates: should we plant native or exotic species?
Sign Up to like & getrecommendations! Published in 2017 at "Biodiversity and Conservation"
DOI: 10.1007/s10531-017-1377-x
Abstract: Domestic gardens, typically consisting of a mixture of native and non-native plants, support biodiversity. The relative value of these native and non-native plants for invertebrates is largely unknown. To address this a replicated field experiment… read more here.
Keywords: plant; gardens habitats; enhancing gardens; native plants ... See more keywords
ViTScore: a novel three-dimensional Vision Transformer method for accurate prediction of protein-ligand docking poses.
Sign Up to like & getrecommendations! Published in 2023 at "IEEE transactions on nanobioscience"
DOI: 10.1109/tnb.2023.3274640
Abstract: Protein-ligand interactions (PLIs) are essential for cellular activities and drug discovery, and due to the complexity and high cost of experimental methods, there is a great demand for computational approaches, such as protein-ligand docking, to… read more here.
Keywords: native poses; ligand docking; near native; set poses ... See more keywords
AnkPlex: algorithmic structure for refinement of near-native ankyrin-protein docking
Sign Up to like & getrecommendations! Published in 2017 at "BMC Bioinformatics"
DOI: 10.1186/s12859-017-1628-6
Abstract: BackgroundComputational analysis of protein-protein interaction provided the crucial information to increase the binding affinity without a change in basic conformation. Several docking programs were used to predict the near-native poses of the protein-protein complex in… read more here.
Keywords: protein; native poses; protein docking; ankyrin protein ... See more keywords
An SVM-based method for assessment of transcription factor-DNA complex models
Sign Up to like & getrecommendations! Published in 2018 at "BMC Bioinformatics"
DOI: 10.1186/s12859-018-2538-y
Abstract: BackgroundAtomic details of protein-DNA complexes can provide insightful information for better understanding of the function and binding specificity of DNA binding proteins. In addition to experimental methods for solving protein-DNA complex structures, protein-DNA docking can… read more here.
Keywords: transcription; dna complex; complex models; dna ... See more keywords
Ranking near-native candidate protein structures via random forest classification
Sign Up to like & getrecommendations! Published in 2019 at "BMC Bioinformatics"
DOI: 10.1186/s12859-019-3257-8
Abstract: In ab initio protein-structure predictions, a large set of structural decoys are often generated, with the requirement to select best five or three candidates from the decoys. The clustered central structures with the most number… read more here.
Keywords: protein; classification; candidate; forest classification ... See more keywords
Near-Native Visualization of SARS-CoV-2 Induced Membrane Remodeling and Virion Morphogenesis
Sign Up to like & getrecommendations! Published in 2022 at "Viruses"
DOI: 10.3390/v14122786
Abstract: Infection with the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), the causative agent of the COVID-19 pandemic, leads to profound remodeling of cellular membranes, promoting viral replication and virion assembly. A full understanding of this drastic… read more here.
Keywords: near native; microscopy; virion; virion morphogenesis ... See more keywords