A genome-scale metabolic network alignment method within a hypergraph-based framework using a rotational tensor-vector product
Sign Up to like & getrecommendations! Published in 2018 at "Scientific Reports"
DOI: 10.1038/s41598-018-34692-1
Abstract: Biological network alignment aims to discover important similarities and differences and thus find a mapping between topological and/or functional components of different biological molecular networks. Then, the mapped components can be considered to correspond to… read more here.
Keywords: network alignment; network; framework; method ... See more keywords
A Bootstrapping Framework With Interactive Information Modeling for Network Alignment
Sign Up to like & getrecommendations! Published in 2018 at "IEEE Access"
DOI: 10.1109/access.2018.2811721
Abstract: Network alignment is an emerging research topic with great utility value. Its purpose is to recover the hidden alignment between different networks for subsequent cross-network research. Its applications benefit numerous domains including online social networks,… read more here.
Keywords: network alignment; seed; information; network ... See more keywords
Pairwise Versus Multiple Global Network Alignment
Sign Up to like & getrecommendations! Published in 2020 at "IEEE Access"
DOI: 10.1109/access.2020.2976487
Abstract: Biological network alignment (NA) aims to identify similar regions between molecular networks of different species. NA can be local or global. Just as the recent trend in the NA field, we also focus on global… read more here.
Keywords: pna mna; pairwise; network alignment; mna ... See more keywords
Cross-Network Skip-Gram Embedding for Joint Network Alignment and Link Prediction
Sign Up to like & getrecommendations! Published in 2022 at "IEEE Transactions on Knowledge and Data Engineering"
DOI: 10.1109/tkde.2020.2997861
Abstract: Link prediction and network alignment are two fundamental and interleaved tasks in network analysis. In this paper, we propose a novel cross-network embedding model under the Skip-gram framework, which alternately performs link prediction and network… read more here.
Keywords: network alignment; link prediction; network; link ... See more keywords
Network Alignment With Holistic Embeddings
Sign Up to like & getrecommendations! Published in 2023 at "IEEE Transactions on Knowledge and Data Engineering"
DOI: 10.1109/tkde.2021.3101840
Abstract: Network alignment is the task of identifying topologically and semantically similar nodes across (two) different networks. It plays an important role in various applications ranging from social network analysis to bioinformatic network interactions. However, existing… read more here.
Keywords: information; holistic embeddings; network; alignment holistic ... See more keywords
Sinkhorn Distance Minimization for Adaptive Semi-Supervised Social Network Alignment.
Sign Up to like & getrecommendations! Published in 2023 at "IEEE transactions on neural networks and learning systems"
DOI: 10.1109/tnnls.2023.3267126
Abstract: Social network alignment, aiming at linking identical identities across different social platforms, is a fundamental task in social graph mining. Most existing approaches are supervised models and require a large number of manually labeled data,… read more here.
Keywords: social network; sinkhorn distance; model; network alignment ... See more keywords
Data-driven biological network alignment that uses topological, sequence, and functional information
Sign Up to like & getrecommendations! Published in 2021 at "BMC Bioinformatics"
DOI: 10.1186/s12859-021-03971-6
Abstract: Background Network alignment (NA) can transfer functional knowledge between species’ conserved biological network regions. Traditional NA assumes that it is topological similarity (isomorphic-like matching) between network regions that corresponds to the regions’ functional relatedness. However,… read more here.
Keywords: network alignment; information; network; tara ... See more keywords
Discovering large conserved functional components in global network alignment by graph matching
Sign Up to like & getrecommendations! Published in 2018 at "BMC Genomics"
DOI: 10.1186/s12864-018-5027-9
Abstract: BackgroundAligning protein-protein interaction (PPI) networks is very important to discover the functionally conserved sub-structures between different species. In recent years, the global PPI network alignment problem has been extensively studied aiming at finding the one-to-one… read more here.
Keywords: network alignment; global network; network; large conserved ... See more keywords
LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules
Sign Up to like & getrecommendations! Published in 2019 at "BMC Genomics"
DOI: 10.1186/s12864-019-6271-3
Abstract: Cross-species analysis of protein-protein interaction (PPI) networks provides an effective means of detecting conserved interaction patterns. Identifying such conserved substructures between PPI networks of different species increases our understanding of the principles deriving evolution of… read more here.
Keywords: network alignment; conserved modules; network; ppi networks ... See more keywords
Design and Implementation of a New Local Alignment Algorithm for Multilayer Networks
Sign Up to like & getrecommendations! Published in 2022 at "Entropy"
DOI: 10.3390/e24091272
Abstract: Network alignment (NA) is a popular research field that aims to develop algorithms for comparing networks. Applications of network alignment span many fields, from biology to social network analysis. NA comes in two forms: global… read more here.
Keywords: alignment; local alignment; multilayer networks; network alignment ... See more keywords