The rice AT-rich pincer-like element family of conserved noncoding sequences regulates chromatin loop formation.
Sign Up to like & getrecommendations! Published in 2025 at "Plant physiology"
DOI: 10.1093/plphys/kiaf211
Abstract: The comprehensive annotation of regulatory elements in linear genomes is needed to elucidate the molecular mechanisms underlying chromatin loop formation in plants. Here, we characterized a novel family of conserved noncoding sequences (CNSs) in the… read more here.
Keywords: loop formation; rich pincer; chromatin loop; conserved noncoding ... See more keywords
Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize.
Sign Up to like & getrecommendations! Published in 2021 at "Genome research"
DOI: 10.1101/gr.266528.120
Abstract: Thousands of species will be sequenced in the next few years; however, understanding how their genomes work without an unlimited budget requires both molecular and novel evolutionary approaches. We developed a sensitive sequence alignment pipeline… read more here.
Keywords: gene expression; noncoding sequences; loss gene; conserved noncoding ... See more keywords
Conserved noncoding sequences correlate with distant gene contacts in Arabidopsis and Brassica.
Sign Up to like & getrecommendations! Published in 2023 at "Journal of integrative plant biology"
DOI: 10.1111/jipb.13465
Abstract: Physical contact between genes distant on chromosomes is a potentially important way for genes to coordinate their expressions. To investigate the potential importance of distant contacts, we performed high-throughput chromatin conformation capture (Hi-C) experiments on… read more here.
Keywords: brassica; gene contacts; distant gene; conserved noncoding ... See more keywords