NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods.
Sign Up to like & getrecommendations! Published in 2023 at "Nucleic acids research"
DOI: 10.1093/nar/gkad429
Abstract: RNA-sequencing has become one of the most used high-throughput approaches to gain knowledge about the expression of all different RNA subpopulations. However, technical artifacts, either introduced during library preparation and/or data analysis, can influence the… read more here.
Keywords: normseq tool; normalization methods; rna; tool evaluation ... See more keywords
A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data
Sign Up to like & getrecommendations! Published in 2017 at "PLoS ONE"
DOI: 10.1371/journal.pone.0176185
Abstract: Normalization is an essential step with considerable impact on high-throughput RNA sequencing (RNA-seq) data analysis. Although there are numerous methods for read count normalization, it remains a challenge to choose an optimal method due to… read more here.
Keywords: normalization methods; analysis; seq data; normalization ... See more keywords
Characteristics of Normalization Methods in Quantitative Urinary Metabolomics—Implications for Epidemiological Applications and Interpretations
Sign Up to like & getrecommendations! Published in 2022 at "Biomolecules"
DOI: 10.3390/biom12070903
Abstract: A systematic comparison is presented for the effects of seven different normalization schemes in quantitative urinary metabolomics. Morning spot urine samples were analyzed with nuclear magnetic resonance (NMR) spectroscopy from a population-based group of 994… read more here.
Keywords: metabolite associations; normalization methods; normalization schemes; normalization ... See more keywords
Effect of Normalization Methods on Accuracy of Estimating Low- and High-Molecular Weight PAHs Distribution in the Soils of a Coking Plant
Sign Up to like & getrecommendations! Published in 2022 at "International Journal of Environmental Research and Public Health"
DOI: 10.3390/ijerph192315470
Abstract: Mapping spatial distribution of soil contaminants at contaminated sites is the basis of risk assessment. Hotspots can cause strongly skewed distribution of the raw contaminant concentrations in soil, and consequently can require suitable normalization prior… read more here.
Keywords: normalization methods; pahs; molecular weight; pahs distribution ... See more keywords
Statistical Normalization Methods in Interpersonal and Intertheoretic Comparisons
Sign Up to like & getrecommendations! Published in 2020 at "The Journal of Philosophy"
DOI: 10.5840/jphil202011725
Abstract: A major problem for interpersonal aggregation is how to compare utility across individuals; a major problem for decision-making under normative uncertainty is the formally analogous problem of how to compare choice-worthiness across theories. We introduce… read more here.
Keywords: normalization methods; intertheoretic comparisons; methods interpersonal; interpersonal intertheoretic ... See more keywords
Empirical evaluation of data normalization methods for molecular classification
Sign Up to like & getrecommendations! Published in 2018 at "PeerJ"
DOI: 10.7717/peerj.4584
Abstract: Background Data artifacts due to variations in experimental handling are ubiquitous in microarray studies, and they can lead to biased and irreproducible findings. A popular approach to correct for such artifacts is through post hoc… read more here.
Keywords: normalization methods; molecular classification; classification; accuracy ... See more keywords