de novo transcriptome profile of two earthworms Lampito mauritii and Drawida calebi during regeneration
Sign Up to like & getrecommendations! Published in 2021 at "Biochemistry and Biophysics Reports"
DOI: 10.1016/j.bbrep.2021.101092
Abstract: Earthworms have remarkable ability to regenerate its tail and head region. However the list of genes expressed in this regeneration process has been less explored baring a few species. The current study involves the de… read more here.
Keywords: lampito mauritii; novo transcriptome; regeneration; drawida calebi ... See more keywords
A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors.
Sign Up to like & getrecommendations! Published in 2017 at "Cell reports"
DOI: 10.1016/j.celrep.2016.12.063
Abstract: Mammals have extremely limited regenerative capabilities; however, axolotls are profoundly regenerative and can replace entire limbs. The mechanisms underlying limb regeneration remain poorly understood, partly because the enormous and incompletely sequenced genomes of axolotls have… read more here.
Keywords: novo transcriptome; regeneration; tissue mapped; mapped axolotl ... See more keywords
De novo transcriptome assembly of shrimp Palaemon serratus
Sign Up to like & getrecommendations! Published in 2017 at "Genomics Data"
DOI: 10.1016/j.gdata.2016.12.009
Abstract: The shrimp Palaemon serratus is a coastal decapod crustacean with a high commercial value. It is harvested for human consumption. In this study, we used Illumina sequencing technology (HiSeq 2000) to sequence, assemble and annotate… read more here.
Keywords: palaemon serratus; novo transcriptome; serratus; transcriptome assembly ... See more keywords
De novo transcriptome assembly for the lung of the ornamented pygmy frog (Microhyla fissipes)
Sign Up to like & getrecommendations! Published in 2017 at "Genomics Data"
DOI: 10.1016/j.gdata.2017.07.002
Abstract: Microhyla fissipes, belonging to Neobatrachia, is a new model organism to study developmental biology, adaptive mechanisms from aquatic to terrestrial life, environmental toxicology, and human disease. M. fissipes use of lungs soon after hatching makes… read more here.
Keywords: novo transcriptome; transcriptome assembly; assembly lung; microhyla fissipes ... See more keywords
De novo transcriptome assembly of a facultative parasitic nematode Pelodera (syn. Rhabditis) strongyloides.
Sign Up to like & getrecommendations! Published in 2019 at "Gene"
DOI: 10.1016/j.gene.2019.05.041
Abstract: Pelodera strongyloides is a generally free-living gonochoristic facultative nematode. The whole genomic sequence of P. strongyloides remains unknown but 4 small subunit ribosomal RNA (ssrRNA) gene sequences are available. This project launched a de novo… read more here.
Keywords: novo transcriptome; pelodera; transcriptome assembly; rna ... See more keywords
De novo transcriptome assembly and comparative analysis between male and benzyladenine-induced female inflorescence buds of Plukenetia volubilis.
Sign Up to like & getrecommendations! Published in 2018 at "Journal of plant physiology"
DOI: 10.1016/j.jplph.2017.12.006
Abstract: Plukenetia volubilis is a promising oilseed crop due to its seeds being rich in unsaturated fatty acids, especially alpha-linolenic acid. P. volubilis is monoecious, with separate male and female flowers on the same inflorescence. We… read more here.
Keywords: novo transcriptome; plukenetia volubilis; transcriptome assembly; inflorescence ... See more keywords
De novo transcriptome assembly of the amphipod Gammarus chevreuxi exposed to chronic hypoxia
Sign Up to like & getrecommendations! Published in 2017 at "Marine Genomics"
DOI: 10.1016/j.margen.2017.01.006
Abstract: Abstract Environmental hypoxia is becoming more prevalent in aquatic environments due to eutrophication and climate change. While the ecological and physiological responses of marine animals to hypoxia have received considerable attention, the molecular responses remain… read more here.
Keywords: chronic hypoxia; novo transcriptome; gammarus chevreuxi; hypoxia ... See more keywords
De novo transcriptome assembly of the calanoid copepod Neocalanus flemingeri: A new resource for emergence from diapause.
Sign Up to like & getrecommendations! Published in 2018 at "Marine genomics"
DOI: 10.1016/j.margen.2017.09.002
Abstract: Copepods, small planktonic crustaceans, are key links between primary producers and upper trophic levels, including many economically important fishes. In the subarctic North Pacific, the life cycle of copepods like Neocalanus flemingeri includes an ontogenetic… read more here.
Keywords: novo transcriptome; calanoid; neocalanus flemingeri; assembly ... See more keywords
De novo transcriptome assembly and gene expression profile of thermally challenged green abalone (Haliotis fulgens: Gastropoda) under acute hypoxia and hypercapnia.
Sign Up to like & getrecommendations! Published in 2019 at "Marine genomics"
DOI: 10.1016/j.margen.2019.01.007
Abstract: Transcriptional regulation constitutes a rapid response of marine organisms facing stressful environmental conditions, such as the concomitant exposure to warming, ocean acidification and hypoxia under climate change. In previous studies, we investigated whole-organism physiological patterns… read more here.
Keywords: novo transcriptome; haliotis fulgens; hypoxia hypercapnia; hypercapnia ... See more keywords
De novo transcriptome assembly and protein profiling of copper-induced lignocellulolytic fungus Ganoderma lucidum MDU-7 reveals genes involved in lignocellulose degradation and terpenoid biosynthetic pathways.
Sign Up to like & getrecommendations! Published in 2019 at "Genomics"
DOI: 10.1016/j.ygeno.2019.01.012
Abstract: Ganoderma lucidum is an important medicinal fungus that possesses exceedingly high lignocellulose degrading ability. Evidently, Cu2+ has decisive roles on the mycelial growth and enzyme production. To reveal the effect of Cu2+ on G. lucidum… read more here.
Keywords: novo transcriptome; fungus; ganoderma lucidum; transcriptome assembly ... See more keywords
De novo Transcriptome Analysis Revealed the Putative Pathway Genes Involved in Biosynthesis of Moracins in Morus alba L.
Sign Up to like & getrecommendations! Published in 2022 at "ACS Omega"
DOI: 10.1021/acsomega.2c00409
Abstract: Moracins, a kind of 2-phenyl-benzofuran compound from Moraceae, serve as phytoalexins with antimicrobial, anti-inflammatory, antitumor, and antidiabetes activities and respond to biotic and abiotic stresses, while their biosynthetic pathway and regulatory mechanism remain unclear. Here,… read more here.
Keywords: biosynthetic pathway; involved biosynthesis; novo transcriptome; biosynthesis ... See more keywords