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ntHash2: recursive spaced seed hashing for nucleotide sequences

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1 Published in 2022 at "Bioinformatics"

DOI: 10.1093/bioinformatics/btac564

Abstract: Abstract Motivation Spaced seeds are robust alternatives to k-mers in analyzing nucleotide sequences with high base mismatch rates. Hashing is also crucial for efficiently storing abundant sequence data. Here, we introduce ntHash2, a fast algorithm… read more here.

Keywords: spaced seed; seed hashing; nthash2 recursive; nucleotide sequences ... See more keywords