B‐DNA Structure and Stability: The Role of Nucleotide Composition and Order
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DOI: 10.1002/open.202100231
Abstract: Abstract We have quantum chemically analyzed the influence of nucleotide composition and sequence (that is, order) on the stability of double‐stranded B‐DNA triplets in aqueous solution. To this end, we have investigated the structure and… read more here.
Keywords: dna; order; nucleotide composition; structure ... See more keywords
An Improved Codon Modeling Approach for Accurate Estimation of the Mutation Bias
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DOI: 10.1093/molbev/msac005
Abstract: Abstract Phylogenetic codon models are routinely used to characterize selective regimes in coding sequences. Their parametric design, however, is still a matter of debate, in particular concerning the question of how to account for differing… read more here.
Keywords: mutation selection; nucleotide composition; mutation; approach ... See more keywords
Nucleotide composition affects codon usage toward the 3'-end
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DOI: 10.1371/journal.pone.0225633
Abstract: The 3’-end of the coding sequence in several species is known to show specific codon usage bias. Several factors have been suggested to underlie this phenomenon, including selection against translation efficiency, selection for translation accuracy,… read more here.
Keywords: nucleotide composition; end; codon usage; composition affects ... See more keywords