Molecular identification of forensically important calliphoridae and sarcophagidae species using ITS2 nucleotide sequences.
Sign Up to like & getrecommendations! Published in 2018 at "Forensic science international"
DOI: 10.1016/j.forsciint.2017.12.017
Abstract: The application of insect evidence to forensic investigations is mainly based on the estimation of postmortem interval and the identification of insect species from samples that are collected from the crime scene. Due to the… read more here.
Keywords: its2 nucleotide; nucleotide sequences; identification; calliphoridae sarcophagidae ... See more keywords
Short Communication: Choosing the Right Program for the Identification of HIV-1 Transmission Networks from Nucleotide Sequences Sampled from Different Populations
Sign Up to like & getrecommendations! Published in 2020 at "AIDS Research and Human Retroviruses"
DOI: 10.1089/aid.2020.0033
Abstract: HIV-TRAnsmission Cluster Engine (HIV-TRACE) and Cluster Picker are some of the most widely used programs for identifying HIV-1 transmission networks from nucleotide sequences. However, choosing between these tools is subjective and often a matter of… read more here.
Keywords: transmission; networks nucleotide; nucleotide sequences; hiv transmission ... See more keywords
AncestralClust: Clustering of Divergent Nucleotide Sequences by Ancestral Sequence Reconstruction using Phylogenetic Trees.
Sign Up to like & getrecommendations! Published in 2021 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btab723
Abstract: MOTIVATION Clustering is a fundamental task in the analysis of nucleotide sequences. Despite the exponential increase in the size of sequence databases of homologous genes, few methods exist to cluster divergent sequences. Traditional clustering methods… read more here.
Keywords: ancestralclust clustering; divergent; nucleotide sequences; divergent nucleotide ... See more keywords
ntHash2: recursive spaced seed hashing for nucleotide sequences
Sign Up to like & getrecommendations! Published in 2022 at "Bioinformatics"
DOI: 10.1093/bioinformatics/btac564
Abstract: Abstract Motivation Spaced seeds are robust alternatives to k-mers in analyzing nucleotide sequences with high base mismatch rates. Hashing is also crucial for efficiently storing abundant sequence data. Here, we introduce ntHash2, a fast algorithm… read more here.
Keywords: spaced seed; seed hashing; nthash2 recursive; nucleotide sequences ... See more keywords
Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes
Sign Up to like & getrecommendations! Published in 2017 at "BMC Bioinformatics"
DOI: 10.1186/s12859-017-1529-8
Abstract: BackgroundOrthology characterizes genes of different organisms that arose from a single ancestral gene via speciation, in contrast to paralogy, which is assigned to genes that arose via gene duplication. An accurate orthology assignment is a… read more here.
Keywords: nucleotide sequences; coding nucleotide; orthologous genes; gene ... See more keywords
Nucleotide sequences of mitochondrial cytochrome b gene for phylogeny of some species of Rodentia
Sign Up to like & getrecommendations! Published in 2023 at "Bioscience Journal"
DOI: 10.14393/bj-v39n0a2023-66743
Abstract: Order Rodentia contains approximately half of all living mammalian species. Most of the living species diversity within rodents is within five monophyletic radiations: Hystricognathi, Sciuridae, Geomyoidea, Dipodidae, and Muroidea. The samples collected across different areas… read more here.
Keywords: gene phylogeny; cytochrome gene; sequences mitochondrial; nucleotide sequences ... See more keywords
Redescription and First Nucleotide Sequences of Rhinobatonchocotyle pacifica Oliva & Luque, 1995 (Monogenea: Hexabothriidae), a Parasite of Pseudobatos planiceps (Garman, 1880) (Rhinopristiformes: Rhinobatidae) from Peru
Sign Up to like & getrecommendations! Published in 2019 at "Acta Parasitologica"
DOI: 10.2478/s11686-019-00101-4
Abstract: Specimens of Rhinobatonchocotyle pacifica Oliva & Luque, 1995 (Hexabothriidae) were collected from the gill filaments of Pacific guitarfish, Pseudobatos planiceps (Garman, 1880) (Rhinopristiformes: Rhinobatidae), from off the coast of Chorrillos, Lima, Peru. Since the original… read more here.
Keywords: pseudobatos planiceps; luque 1995; nucleotide sequences; pacifica oliva ... See more keywords
In silico characterization of differentially expressed short-read nucleotide sequences identified in dieback stress-induced transcriptomic analysis reveals their role as antimicrobial peptides
Sign Up to like & getrecommendations! Published in 2023 at "Frontiers in Plant Science"
DOI: 10.3389/fpls.2023.1168221
Abstract: We investigated the in silico characterization of short-length nucleotide sequences that were differentially expressed in dieback stress-induced transcriptomic analysis. They displayed homology with C-terminal flanking peptides and defensins-like proteins, revealing their antimicrobial activity. Their predicted… read more here.
Keywords: silico characterization; antimicrobial peptides; differentially expressed; analysis ... See more keywords