Comparative genomic analysis for nucleotide, codon, and amino acid usage patterns of mycoplasmas
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DOI: 10.1002/jobm.201700490
Abstract: The evolutionary factors in influencing the genetic characteristics of nucleotide, synonymous codon, and amino acid usage of 18 mycoplasma species were analyzed. The nucleotide usage at the 1st and 2nd codon position which determines amino… read more here.
Keywords: amino acid; nucleotide usage; acid usage; codon ... See more keywords
Nucleotide Usage Biases Distort Inferences of the Species Tree
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DOI: 10.1093/gbe/evab290
Abstract: Despite the importance of natural selection in species’ evolutionary history, phylogenetic methods that take into account population-level processes typically ignore selection. The assumption of neutrality is often based on the idea that selection occurs at… read more here.
Keywords: usage biases; tree estimation; selection species; selection ... See more keywords