Higher pH is associated with enhanced co-occurrence network complexity, stability and nutrient cycling functions in the rice rhizosphere microbiome.
Sign Up to like & getrecommendations! Published in 2022 at "Environmental microbiology"
DOI: 10.1111/1462-2920.16185
Abstract: The rice rhizosphere microbiota is crucial for crop yields and nutrient use efficiency. However, little is known about how co-occurrence patterns, keystone taxa and functional gene assemblages relate to soil pH in the rice rhizosphere… read more here.
Keywords: rhizosphere microbiome; occurrence network; rice; rice rhizosphere ... See more keywords
Plants Play Stronger Effects on Soil Fungal than Bacterial Communities and Co-Occurrence Network Structures in a Subtropical Tree Diversity Experiment
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DOI: 10.1128/spectrum.00134-22
Abstract: Increasing biodiversity loss profoundly affects community structure and ecosystem functioning. Therefore, revealing the mechanisms associated with community assembly and co-occurrence network structure of microbes along plant species diversity gradients is very important for understanding biodiversity… read more here.
Keywords: community; diversity; occurrence network; structure ... See more keywords
Difficulty in inferring microbial community structure based on co-occurrence network approaches
Sign Up to like & getrecommendations! Published in 2019 at "BMC Bioinformatics"
DOI: 10.1186/s12859-019-2915-1
Abstract: BackgroundCo-occurrence networks—ecological associations between sampled populations of microbial communities inferred from taxonomic composition data obtained from high-throughput sequencing techniques—are widely used in microbial ecology. Several co-occurrence network methods have been proposed. Co-occurrence network methods only… read more here.
Keywords: network methods; occurrence; network approaches; occurrence network ... See more keywords
Combined Metabarcoding and Co-occurrence Network Analysis to Profile the Bacterial, Fungal and Fusarium Communities and Their Interactions in Maize Stalks
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DOI: 10.3389/fmicb.2019.00261
Abstract: Fusarium Head Blight (FHB) is one of the most devastating diseases of cereals worldwide, threatening both crop production by affecting cereal grain development, and human and animal health by contaminating grains with mycotoxins. Despite that… read more here.
Keywords: fusarium; fusarium spp; fungal fusarium; occurrence network ... See more keywords
Consumer Attitudes toward Vertically Farmed Produce in Russia: A Study Using Ordered Logit and Co-Occurrence Network Analysis
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DOI: 10.3390/foods10030638
Abstract: Vertical indoor farming under artificial lighting has gained attention as a novel means of food production. However, consumer acceptance of vegetable crops grown under artificial conditions is not well understood. Our nationwide online survey of… read more here.
Keywords: toward vertically; vertically farmed; attitudes toward; occurrence network ... See more keywords