Nitrogen and water addition regulate soil fungal diversity and co-occurrence networks
Sign Up to like & getrecommendations! Published in 2020 at "Journal of Soils and Sediments"
DOI: 10.1007/s11368-020-02629-9
Abstract: A field experiment was conducted to assess the role of nitrogen (N) and water addition in shaping soil fungal communities and co-occurrence networks in temperate grassland, northern China. We measured soil fungal and plant community… read more here.
Keywords: addition; soil fungal; soil; occurrence networks ... See more keywords
Improving the Inference of Co-Occurrence Networks in the Bovine Rumen Microbiome
Sign Up to like & getrecommendations! Published in 2020 at "IEEE/ACM Transactions on Computational Biology and Bioinformatics"
DOI: 10.1109/tcbb.2018.2879342
Abstract: The importance of the composition and signature of rumen microbial communities has gained increasing attention. One of the key techniques was to infer co-abundance networks through correlation analysis based on relative abundances. While substantial insights… read more here.
Keywords: improving inference; occurrence networks; rumen microbiome; bovine rumen ... See more keywords
Incorporating phylogenetic metrics to microbial co‐occurrence networks based on amplicon sequences to discern community assembly processes
Sign Up to like & getrecommendations! Published in 2019 at "Molecular Ecology Resources"
DOI: 10.1111/1755-0998.13079
Abstract: Co‐occurrence network analysis based on amplicon sequences is increasingly used to study microbial communities. Patterns of co‐existence or mutual exclusion between pairs of taxa are often interpreted as reflecting positive or negative biological interactions. However,… read more here.
Keywords: assembly processes; microbial occurrence; occurrence networks; occurrence ... See more keywords
Geospatial variation in co‐occurrence networks of nitrifying microbial guilds
Sign Up to like & getrecommendations! Published in 2019 at "Molecular Ecology"
DOI: 10.1111/mec.14893
Abstract: Microbial communities transform nitrogen (N) compounds, thereby regulating the availability of N in soil. The N cycle is defined by interacting microbial functional groups, as inorganic N‐products formed in one process are the substrate in… read more here.
Keywords: nitrifying microbial; networks nitrifying; variation; variation occurrence ... See more keywords
ENQUIRE automatically reconstructs, expands, and drives enrichment analysis of gene and Mesh co-occurrence networks from context-specific biomedical literature
Sign Up to like & getrecommendations! Published in 2025 at "PLOS Computational Biology"
DOI: 10.1371/journal.pcbi.1012745
Abstract: The accelerating growth of scientific literature overwhelms our capacity to manually distil complex phenomena like molecular networks linked to diseases. Moreover, biases in biomedical research and database annotation limit our interpretation of facts and generation… read more here.
Keywords: occurrence networks; enquire; reconstructs expands; gene ... See more keywords
Functional shortcuts in language co-occurrence networks
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DOI: 10.1371/journal.pone.0203025
Abstract: Human language contains regular syntactic structures and grammatical patterns that should be detectable in their co-occurence networks. However, most standard complex network measures can hardly differentiate between co-occurence networks built from an empirical corpus and… read more here.
Keywords: shortcuts language; functional shortcuts; occurrence networks; language occurrence ... See more keywords
What makes poetic language different? An experiment in genre recognition using word co-occurrence networks in Afrikaans
Sign Up to like & getrecommendations! Published in 2025 at "Southern African Linguistics and Applied Language Studies"
DOI: 10.2989/16073614.2024.2367436
Abstract: Abstract Despite being one of the oldest literary genres, poetry is notoriously difficult to define. Nevertheless, various literary scholars draw attention to poetry’s foregrounding of language itself, as opposed to using language to convey meaning.… read more here.
Keywords: occurrence networks; word; language; word occurrence ... See more keywords
Trypanosoma cruzi reservoir—triatomine vector co-occurrence networks reveal meta-community effects by synanthropic mammals on geographic dispersal
Sign Up to like & getrecommendations! Published in 2017 at "PeerJ"
DOI: 10.7717/peerj.3152
Abstract: Contemporary patterns of land use and global climate change are modifying regional pools of parasite host species. The impact of host community changes on human disease risk, however, is difficult to assess due to a… read more here.
Keywords: vector; community; host; occurrence networks ... See more keywords