PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing
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DOI: 10.1093/bioinformatics/btz964
Abstract: Abstract Motivation One of the most widespread methods used in taxonomy studies to distinguish between strains or taxa is the calculation of average nucleotide identity. It requires a computationally expensive alignment step and is therefore… read more here.
Keywords: short oligonucleotide; oligonucleotide; oligonucleotide frequencies; based short ... See more keywords