Initial position optimization in molecular dynamics simulations for a Coulomb system
Sign Up to like & getrecommendations! Published in 2025 at "Physics of Plasmas"
DOI: 10.1063/5.0253486
Abstract: A new algorithm for molecular dynamics (MD) simulations is developed to optimize plasma particle distributions at given initial temperatures. By combining velocity scaling and reassignment, the method effectively eliminates the initial rise and oscillation in… read more here.
Keywords: dynamics simulations; optimization molecular; position optimization; molecular dynamics ... See more keywords
Joint Optimization of Molecular Resource Allocation and Relay Positioning in Diffusive Nanonetworks
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DOI: 10.1109/access.2018.2879159
Abstract: We consider a realistic two-hop diffusion-based molecular communication (DbMC) system with spherical absorbing receivers in the presence of molecular degradation and noises. We address the problem of joint optimization of molecules allocation and relay location… read more here.
Keywords: joint optimization; relay; molecular resource; optimization molecular ... See more keywords
Modeling and Optimization of a Molecular Biocontroller for the Regulation of Complex Metabolic Pathways
Sign Up to like & getrecommendations! Published in 2022 at "Frontiers in Molecular Biosciences"
DOI: 10.3389/fmolb.2022.801032
Abstract: Achieving optimal production in microbial cell factories, robustness against changing intracellular and environmental perturbations requires the dynamic feedback regulation of the pathway of interest. Here, we consider a merging metabolic pathway motif, which appears in… read more here.
Keywords: methodology; regulation complex; regulation; optimization molecular ... See more keywords